Genome Meta Information: Paenacidovorax caeni R-24608 (GCA_900116825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900116825.1 | ||
| HOMD Taxon-ID | HMT-0211 | ||
| Species Name (in use by HOMD) | Paenacidovorax caeni | ||
| Organism Name (as deposited) | HMT-211 Paenacidovorax caeni R-24608 | ||
| Strain or Isolate | R-24608 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenacidovorax; s__Paenacidovorax caeni |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 259 | ||
| Contigs |
|
||
| Total Sequence Length | 4,152,335 (bp) | ||
| GC Percentage | 65.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/116/825/GCA_900116825.1_IMG-taxon_2634166357_annotated_assembly | ||
| CDS | 3786 | ||
| Genes | 3868 | ||
| mRNA | 3868 | ||
| misc RNA | 25 | ||
| rRNA | 5 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.33 % | ||
| CheckM Contamination | 0.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2634166357 annotated |
| GenBank Assembly Accession | GCA_900116825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900116825.1 [NCBI] |
| BioSample | SAMN04489707 [NCBI] |
| BioProject | PRJEB17605 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-02-12T01:41:04.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | FPBX01 |
| NCBI TaxID | 343013 |
| Isolation Source | |
| Geo Location | missing |
