Genome Meta Information: Prevotella scopos DSM 22613 (GCA_900129535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900129535.1 | ||
| HOMD Taxon-ID | HMT-0885 | ||
| Species Name (in use by HOMD) | Prevotella scopos | ||
| Organism Name (as deposited) | HMT-885 Prevotella scopos DSM 22613 | ||
| Strain or Isolate | DSM 22613 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella scopos |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 305 | ||
| Contigs |
|
||
| Total Sequence Length | 3,209,893 (bp) | ||
| GC Percentage | 40.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/129/535/GCA_900129535.1_IMG-taxon_2695420955_annotated_assembly | ||
| CDS | 2544 | ||
| Genes | 2608 | ||
| mRNA | 2608 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2695420955 annotated |
| GenBank Assembly Accession | GCA_900129535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900129535.1 [NCBI] |
| BioSample | SAMN05444364 [NCBI] |
| BioProject | PRJEB18205 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-07-26T23:04:14.986 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FQWA01 |
| NCBI TaxID | 1236518 |
| Isolation Source | missing |
| Geo Location | United Kingdom |
