Genome Meta Information: Porphyromonas gingivalis 3_3 (GCA_900157215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900157215.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis 3_3 | ||
| Strain or Isolate | 3_3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina Nextera 2 x100 bp on the HiSeq-2000 Platform with the CASAVA1.8.2 pipeline | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,312,663 (bp) | ||
| GC Percentage | 48.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/215/GCA_900157215.1_Strain_3-3 | ||
| CDS | 1934 | ||
| Genes | 2005 | ||
| mRNA | 2005 | ||
| misc RNA | 20 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.45 % | ||
| CheckM Completeness | 98.31 % | ||
| CheckM Contamination | 1.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Strain 3-3 |
| GenBank Assembly Accession | GCA_900157215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900157215.1 [NCBI] |
| BioSample | SAMEA3505341 [NCBI] |
| BioProject | PRJEB10280 [NCBI] |
| Submitter | Melbourne Dental School, University of Melbourne |
| Submission Date | 2017-01-20T08:05:23.230 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FUFB01 |
| NCBI TaxID | 837 |
| Isolation Source | Subgingival plaque |
| Geo Location | USA |
