Genome Meta Information: Porphyromonas gingivalis AFR5B1 (GCA_900157345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900157345.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis AFR5B1 | ||
| Strain or Isolate | AFR5B1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina, Nextera, 2 ? 100 bp paired-end reads, HiSeq-2000, CASAVA1.8.2 pipeline | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,290,524 (bp) | ||
| GC Percentage | 48.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/157/345/GCA_900157345.1_AFR-5B1 | ||
| CDS | 1925 | ||
| Genes | 1987 | ||
| mRNA | 1987 | ||
| misc RNA | 12 | ||
| rRNA | 2 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.55 % | ||
| CheckM Completeness | 98.6 % | ||
| CheckM Contamination | 0.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | AFR-5B1 |
| GenBank Assembly Accession | GCA_900157345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900157345.1 [NCBI] |
| BioSample | SAMEA3505350 [NCBI] |
| BioProject | PRJEB10280 [NCBI] |
| Submitter | Melbourne Dental School, University of Melbourne |
| Submission Date | 2017-01-20T08:05:24.300 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FUFJ01 |
| NCBI TaxID | 837 |
| Isolation Source | Subgingival plaque, from a periodontal pocket at least 6mm deep |
| Geo Location | Sudan |
