Genome Meta Information: Brochothrix thermosphacta CD 337 (GCA_900332045.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900332045.1 | ||
| HOMD Taxon-ID | HMT-0241 | ||
| Species Name (in use by HOMD) | Brochothrix thermosphacta | ||
| Organism Name (as deposited) | HMT-241 Brochothrix thermosphacta CD 337 | ||
| Strain or Isolate | CD 337 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix; s__Brochothrix thermosphacta |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 526 | ||
| Contigs |
|
||
| Total Sequence Length | 2,594,377 (bp) | ||
| GC Percentage | 36.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/332/045/GCA_900332045.1_Brochothrix_thermosphacta_CD_337 | ||
| CDS | 2440 | ||
| Genes | 2604 | ||
| mRNA | 2604 | ||
| misc RNA | 50 | ||
| rRNA | 28 | ||
| tRNA | 85 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.19 % | ||
| CheckM Completeness | 98.23 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Brochothrix thermosphacta CD 3 |
| GenBank Assembly Accession | GCA_900332045.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900332045.1 [NCBI] |
| BioSample | SAMEA104710648 [NCBI] |
| BioProject | PRJEB25018 [NCBI] |
| Submitter | INRA - Oniris |
| Submission Date | 2018-07-03T16:42:16.320 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2756 |
| Isolation Source | shrimp |
| Geo Location | France |
