Genome Meta Information: Parabacteroides merdae NCTC13052 (GCA_900445495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900445495.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae NCTC13052 | ||
| Strain or Isolate | NCTC13052 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,403,124 (bp) | ||
| GC Percentage | 45.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/495/GCA_900445495.1_52683_B04 | ||
| CDS | 3636 | ||
| Genes | 3749 | ||
| mRNA | 3749 | ||
| misc RNA | 14 | ||
| rRNA | 19 | ||
| tRNA | 79 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 98.22 % | ||
| CheckM Contamination | 3.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52683_B04 |
| GenBank Assembly Accession | GCA_900445495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900445495.1 [NCBI] |
| BioSample | SAMEA48404668 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-09-20T08:06:35.253 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UFTK01 |
| NCBI TaxID | 46503 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
