Genome Meta Information: Scardovia inopinata NCTC12937 (GCA_900445765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900445765.1 | ||
| HOMD Taxon-ID | HMT-0642 | ||
| Species Name (in use by HOMD) | Scardovia inopinata | ||
| Organism Name (as deposited) | HMT-642 Scardovia inopinata NCTC12937 | ||
| Strain or Isolate | NCTC12937 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia; s__Scardovia inopinata |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,830,728 (bp) | ||
| GC Percentage | 48.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/765/GCA_900445765.1_53618_F01 | ||
| CDS | 1498 | ||
| Genes | 1562 | ||
| mRNA | 1562 | ||
| misc RNA | 13 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.64 % | ||
| CheckM Contamination | 1.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 53618_F01 |
| GenBank Assembly Accession | GCA_900445765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900445765.1 [NCBI] |
| BioSample | SAMEA101158168 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-09-20T08:06:36.830 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UFTI01 |
| NCBI TaxID | 78259 |
| Isolation Source | Dental caries |
| Geo Location | |
