Genome Meta Information: Bordetella pertussis NCTC5952 (GCA_900445785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900445785.1 | ||
| HOMD Taxon-ID | HMT-0828 | ||
| Species Name (in use by HOMD) | Bordetella pertussis | ||
| Organism Name (as deposited) | HMT-828 Bordetella pertussis NCTC5952 | ||
| Strain or Isolate | NCTC5952 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella; s__Bordetella pertussis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,775,492 (bp) | ||
| GC Percentage | 68.1 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/785/GCA_900445785.1_52451_D01 | ||
| CDS | 4509 | ||
| Genes | 4603 | ||
| mRNA | 4603 | ||
| misc RNA | 18 | ||
| rRNA | 9 | ||
| tRNA | 66 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.44 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52451_D01 |
| GenBank Assembly Accession | GCA_900445785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900445785.1 [NCBI] |
| BioSample | SAMEA24553918 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-09-20T08:06:33.806 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UFUC01 |
| NCBI TaxID | 519 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
