Genome Meta Information: Brevundimonas diminuta NCTC11164 (GCA_900445915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900445915.1 | ||
| HOMD Taxon-ID | HMT-0590 | ||
| Species Name (in use by HOMD) | Brevundimonas diminuta | ||
| Organism Name (as deposited) | HMT-590 Brevundimonas diminuta NCTC11164 | ||
| Strain or Isolate | NCTC11164 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas; s__Brevundimonas diminuta |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,408,470 (bp) | ||
| GC Percentage | 67.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/915/GCA_900445915.1_58529_A01 | ||
| CDS | 3296 | ||
| Genes | 3367 | ||
| mRNA | 3367 | ||
| misc RNA | 13 | ||
| rRNA | 6 | ||
| tRNA | 52 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 99.65 % | ||
| CheckM Completeness | 99.04 % | ||
| CheckM Contamination | 4.19 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 58529_A01 |
| GenBank Assembly Accession | GCA_900445915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900445915.1 [NCBI] |
| BioSample | SAMEA104338351 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2018-02-15T08:08:02.406 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UAQN01 |
| NCBI TaxID | 293 |
| Isolation Source | cerebrospinal fluid |
| Geo Location | |
