Genome Meta Information: Haemophilus pittmaniae NCTC13335 (GCA_900450865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900450865.1 | ||
| HOMD Taxon-ID | HMT-0946 | ||
| Species Name (in use by HOMD) | Haemophilus pittmaniae | ||
| Organism Name (as deposited) | HMT-946 Haemophilus pittmaniae NCTC13335 | ||
| Strain or Isolate | NCTC13335 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D pittmaniae |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,244,325 (bp) | ||
| GC Percentage | 42.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/865/GCA_900450865.1_57675_F01 | ||
| CDS | 2045 | ||
| Genes | 2134 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 26 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.47 % | ||
| CheckM Completeness | 99.37 % | ||
| CheckM Contamination | 2.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 57675_F01 |
| GenBank Assembly Accession | GCA_900450865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900450865.1 [NCBI] |
| BioSample | SAMEA104210807 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2018-01-10T08:06:10.710 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGHS01 |
| NCBI TaxID | 249188 |
| Isolation Source | urine |
| Geo Location | Denmark |
