Genome Meta Information: Lactobacillus gasseri NCTC13722 (GCA_900452355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900452355.1 | ||
| HOMD Taxon-ID | HMT-0615 | ||
| Species Name (in use by HOMD) | Lactobacillus gasseri | ||
| Organism Name (as deposited) | HMT-615 Lactobacillus gasseri NCTC13722 | ||
| Strain or Isolate | NCTC13722 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus gasseri |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,899,682 (bp) | ||
| GC Percentage | 35.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/452/355/GCA_900452355.1_44087_F01 | ||
| CDS | 1794 | ||
| Genes | 1923 | ||
| mRNA | 1923 | ||
| misc RNA | 34 | ||
| rRNA | 18 | ||
| tRNA | 76 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.53 % | ||
| CheckM Contamination | 0.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 44087_F01 |
| GenBank Assembly Accession | GCA_900452355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900452355.1 [NCBI] |
| BioSample | SAMEA3856682 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2016-04-20T10:27:01.276 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGNT01 |
| NCBI TaxID | 1596 |
| Isolation Source | not available: to be reported later |
| Geo Location | United Kingdom: Reading |
