Genome Meta Information: Lactiplantibacillus plantarum NCTC13644 (GCA_900452585.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900452585.1 | ||
| HOMD Taxon-ID | HMT-0861 | ||
| Species Name (in use by HOMD) | Lactiplantibacillus plantarum | ||
| Organism Name (as deposited) | HMT-861 Lactiplantibacillus plantarum NCTC13644 | ||
| Strain or Isolate | NCTC13644 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus; s__Lactiplantibacillus plantarum |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,249,549 (bp) | ||
| GC Percentage | 44.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/452/585/GCA_900452585.1_55064_C01 | ||
| CDS | 3349 | ||
| Genes | 3434 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 17 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 86.79 % | ||
| CheckM Contamination | 1.63 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 55064_C01 |
| GenBank Assembly Accession | GCA_900452585.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA104016171 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-09-20T08:06:38.390 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UASU01 |
| NCBI TaxID | 337330 |
| Isolation Source | Pickled cabbage |
| Geo Location | |
