Genome Meta Information: Neisseria lactamica NCTC10616 (GCA_900454145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900454145.1 | ||
| HOMD Taxon-ID | HMT-0649 | ||
| Species Name (in use by HOMD) | Neisseria lactamica | ||
| Organism Name (as deposited) | HMT-649 Neisseria lactamica NCTC10616 | ||
| Strain or Isolate | NCTC10616 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria lactamica |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,185,892 (bp) | ||
| GC Percentage | 52.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/145/GCA_900454145.1_54949_A01 | ||
| CDS | 1955 | ||
| Genes | 2056 | ||
| mRNA | 2056 | ||
| misc RNA | 21 | ||
| rRNA | 15 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.67 % | ||
| CheckM Completeness | 99.37 % | ||
| CheckM Contamination | 1.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 54949_A01 |
| GenBank Assembly Accession | GCA_900454145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900454145.1 [NCBI] |
| BioSample | SAMEA103980413 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-09-20T08:06:37.996 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGRO01 |
| NCBI TaxID | 486 |
| Isolation Source | Spinal fluid |
| Geo Location | USA: Los Angeles, CA |
