Genome Meta Information: Porphyromonas endodontalis NCTC13058 (GCA_900454815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900454815.1 | ||
| HOMD Taxon-ID | HMT-0273 | ||
| Species Name (in use by HOMD) | Porphyromonas endodontalis | ||
| Organism Name (as deposited) | HMT-273 Porphyromonas endodontalis NCTC13058 | ||
| Strain or Isolate | NCTC13058 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas endodontalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,111,739 (bp) | ||
| GC Percentage | 47.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/815/GCA_900454815.1_52278_C01 | ||
| CDS | 1788 | ||
| Genes | 1863 | ||
| mRNA | 1863 | ||
| misc RNA | 9 | ||
| rRNA | 13 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.92 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52278_C01 |
| GenBank Assembly Accession | GCA_900454815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900454815.1 [NCBI] |
| BioSample | SAMEA4535757 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-05-05T08:08:07.193 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGTE01 |
| NCBI TaxID | 28124 |
| Isolation Source | Root canal |
| Geo Location | |
