Genome Meta Information: Prevotella pallens NCTC13043 (GCA_900454935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900454935.1 | ||
| HOMD Taxon-ID | HMT-0714 | ||
| Species Name (in use by HOMD) | Prevotella pallens | ||
| Organism Name (as deposited) | HMT-714 Prevotella pallens NCTC13043 | ||
| Strain or Isolate | NCTC13043 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella pallens |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,108,714 (bp) | ||
| GC Percentage | 37.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/454/935/GCA_900454935.1_57800_C01 | ||
| CDS | 2573 | ||
| Genes | 2650 | ||
| mRNA | 2650 | ||
| misc RNA | 10 | ||
| rRNA | 17 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.25 % | ||
| CheckM Completeness | 99.64 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 57800_C01 |
| GenBank Assembly Accession | GCA_900454935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900454935.1 [NCBI] |
| BioSample | SAMEA104224808 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2018-01-26T11:05:28.673 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGTP01 |
| NCBI TaxID | 60133 |
| Isolation Source | Oral cavity |
| Geo Location | |
