Genome Meta Information: Prevotella intermedia NCTC13070 (GCA_900455005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900455005.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia NCTC13070 | ||
| Strain or Isolate | NCTC13070 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,607,163 (bp) | ||
| GC Percentage | 43.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/455/005/GCA_900455005.1_50624_A01 | ||
| CDS | 2196 | ||
| Genes | 2269 | ||
| mRNA | 2269 | ||
| misc RNA | 11 | ||
| rRNA | 13 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.71 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 50624_A01 |
| GenBank Assembly Accession | GCA_900455005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900455005.1 [NCBI] |
| BioSample | SAMEA4412688 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-01-25T12:05:51.840 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGTO01 |
| NCBI TaxID | 28131 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
