Genome Meta Information: Pseudomonas fluorescens NCTC9428 (GCA_900636825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900636825.1 | ||
| HOMD Taxon-ID | HMT-0612 | ||
| Species Name (in use by HOMD) | Pseudomonas fluorescens | ||
| Organism Name (as deposited) | HMT-612 Pseudomonas fluorescens NCTC9428 | ||
| Strain or Isolate | NCTC9428 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E; s__Pseudomonas_E fluorescens_BG |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 6,033,966 (bp) | ||
| GC Percentage | 58.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/825/GCA_900636825.1_44858_E01 | ||
| CDS | 5360 | ||
| Genes | 5527 | ||
| mRNA | 5527 | ||
| misc RNA | 72 | ||
| rRNA | 20 | ||
| tRNA | 74 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 84.04 % | ||
| CheckM Completeness | 98.43 % | ||
| CheckM Contamination | 0.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 44858_E01 |
| GenBank Assembly Accession | GCA_900636825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900636825.1 [NCBI] |
| BioSample | SAMEA3881054 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2016-05-18T12:09:41.810 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 294 |
| Isolation Source | not available: to be reported later |
| Geo Location | United Kingdom: London |
