Genome Meta Information: Kocuria rhizophila NCTC8340 (GCA_900637835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900637835.1 | ||
| HOMD Taxon-ID | HMT-0197 | ||
| Species Name (in use by HOMD) | Kocuria rhizophila | ||
| Organism Name (as deposited) | HMT-197 Kocuria rhizophila NCTC8340 | ||
| Strain or Isolate | NCTC8340 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria; s__Kocuria rhizophila_A |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,697,831 (bp) | ||
| GC Percentage | 71.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/835/GCA_900637835.1_52654_C01 | ||
| CDS | 2313 | ||
| Genes | 2388 | ||
| mRNA | 2388 | ||
| misc RNA | 15 | ||
| rRNA | 9 | ||
| tRNA | 49 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 89.3 % | ||
| CheckM Completeness | 98.92 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52654_C01 |
| GenBank Assembly Accession | GCA_900637835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900637835.1 [NCBI] |
| BioSample | SAMEA37372918 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-09-20T08:06:34.986 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 72000 |
| Isolation Source | soil |
| Geo Location | USA: Washington |
