Genome Meta Information: Leptotrichia sp. HMT-417 na (GCA_901873485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_901873485.1 | ||
| HOMD Taxon-ID | HMT-0417 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-417 | ||
| Organism Name (as deposited) | HMT-417 Leptotrichia sp. HMT-417 na | ||
| Strain or Isolate | na | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia wadei_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 38 | ||
| Contigs |
|
||
| Total Sequence Length | 2,375,404 (bp) | ||
| GC Percentage | 29.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/485/GCA_901873485.1_Leptotrichia_sp._BgEED20 | ||
| CDS | 2221 | ||
| Genes | 2284 | ||
| mRNA | 2284 | ||
| misc RNA | 22 | ||
| rRNA | 3 | ||
| tRNA | 37 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.32 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Leptotrichia_sp._BgEED20 |
| GenBank Assembly Accession | GCA_901873485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_901873485.1 [NCBI] |
| BioSample | SAMEA5664364 [NCBI] |
| BioProject | PRJEB32184 [NCBI] |
| Submitter | WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES |
| Submission Date | 2021-02-06T10:37:52.233 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CABFLH01 |
| NCBI TaxID | 159271 |
| Isolation Source | human duodenal aspirate |
| Geo Location | |
