Taxon Table | Genome Table
Genome Meta Information:
Prevotella
pallens
na (GCA_901875295.1)
| HOMD Genome-ID |
GCA_901875295.1
|
| HOMD Taxon-ID |
HMT-0714
|
| Species Name (in use by HOMD) |
Prevotella pallens
|
| Organism Name (as deposited) |
HMT-714 Prevotella pallens na
|
| Strain or Isolate |
na
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella pallens |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
22
|
| Contigs |
Number of Contigs: 151
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,861,587 (bp) |
| GC Percentage |
37.94
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/295/GCA_901875295.1_Prevotella_sp._BgEED25
|
| CDS |
2315
|
| Genes |
2370
|
| mRNA |
2370
|
| misc RNA |
7
|
| rRNA |
3
|
| tRNA |
44
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
99.64 %
|
| CheckM Contamination |
0.18 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
Prevotella_sp._BgEED25
|
| GenBank Assembly Accession |
GCA_901875295.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_901875295.1
[NCBI]
|
| BioSample |
SAMEA5664369
[NCBI]
|
| BioProject |
PRJEB32184
[NCBI]
|
| Submitter |
WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES
|
| Submission Date |
2021-02-06T10:37:50.583
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CABFMB01
|
| NCBI TaxID |
159272
|
| Isolation Source |
human duodenal aspirate
|
| Geo Location |
|
