Genome Meta Information: Rothia mucilaginosa Rothia_mucilaginosa_BgEED27 (GCA_901875305.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_901875305.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 Rothia_mucilaginosa_BgEED27 | ||
| Strain or Isolate | Rothia_mucilaginosa_BgEED27 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia sp902373285 |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 40 | ||
| Contigs |
|
||
| Total Sequence Length | 2,236,411 (bp) | ||
| GC Percentage | 60.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/305/GCA_901875305.1_Rothia_mucilaginosa_BgEED27 | ||
| CDS | 1756 | ||
| Genes | 1826 | ||
| mRNA | 1826 | ||
| misc RNA | 12 | ||
| rRNA | 7 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.83 % | ||
| CheckM Completeness | 97.14 % | ||
| CheckM Contamination | 1.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Rothia_mucilaginosa_BgEED27 |
| GenBank Assembly Accession | GCA_901875305.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_901875305.1 [NCBI] |
| BioSample | SAMEA5664371 [NCBI] |
| BioProject | PRJEB32184 [NCBI] |
| Submitter | WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES |
| Submission Date | 2021-02-06T10:37:41.870 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CABFLY01 |
| NCBI TaxID | 43675 |
| Isolation Source | |
| Geo Location | |
