HOMD Banner
Taxonomy: V4.3   |  16S rRNA RefSeq: V16.03   |  Genomic RefSeq: V11.03   |  Viruses: V1.2

Page Help::Blast Databases

Back To: Main-Help-Menu
Blast Help Menu:
  BLAST Index
  Blast Formats
  Databases
  Parameters
  Blast Programs
  Advanced Parameters
  Linkout to NCBI Blast+
Available HOMD Databases

For RefSeq Blast:

  • 1. eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 9)
  • 2. eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 28)
  • 3. eHOMD 16s rRNA RefSeq Version 15.21 (starts at pos 9)
  • 4. eHOMD 16s rRNA RefSeq Version 15.21 (starts at pos 28)


For Genomes Blast:

1. Genomic DNA from all HOMD Genomes
    => Blast against the whole sequences of genomes annotated automatically by HOMD

2. DNA Sequences of Proteins from all HOMD Genomes
    => Blast against the orfs amino acids of genomes annotated automatically by HOMD

3. "organism": Genomic DNA
    => Blast against the whole sequence of "organism"

4. "organism": DNA of Annotated Proteins
    => Blast against only orfs amino acids of "organism"