HOMD ::Species:Abiotrophia defectiva

Species: Abiotrophia defectiva (HMT-0389) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Abiotrophia; Abiotrophia defectiva

LINKS: Ecology Home | HMT-0389: [Body Sites Data] [Taxon Description] | Life Page: Abiotrophia defectiva

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Abiotrophia defectiva

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.17	0.09	0.03	0.27	0.01	0.08	0.01	0.01	0.01	0.01	0.01	0	0.23	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.01	0.01	0	0	0	0	0	0	0.23	0	0	0	0
90^thp	0.36	0.50	0.13	0.09	0.76	0.01	0.14	0.03	0.03	0.01	0.03	0.02	0.01	0.23	0	0	0	0
Stdev	0.36	0.27	0.34	0.04	0.74	0	0.08	0.01	0.01	0.02	0.03	0.05	0.01	0	0	0	0	0.02
Prev(%)	20.83	55.70	8.33	20.00	31.27	0	12.50	14.29	4.55	5.67	1.54	4.35	0	0	0	0	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.49	0.48	0.16	0.27	0.13	0.17	0.04	0.03	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.22	1.41	0.19	0.74	0.25	0.45	0.10	0.08	0.04	0
Stdev	1.08	0.76	0.59	0.60	0.45	0.60	0.12	0.06	0.04	0
Prev(%)	63.64	75.33	32.47	61.04	53.25	42.86	24.68	31.17	20.78	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.19	0.31	0.06	0.23	0.08	0.11	0.04	0.02	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.34	0.80	0.07	0.66	0.20	0.32	0.08	0.06	0.03	0
Stdev	0.45	0.62	0.26	0.46	0.19	0.18	0.12	0.06	0.04	0
Prev(%)	57.43	69.59	25.68	64.19	48.65	58.11	35.81	30.41	19.59	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.42	0.64	0.20	0.57	0.12	0.14	0.04	0	0	0.04	0.03	0.03	0.10	0.07	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.05	1.51	0.26	2.25	0.28	0.33	0.08	0	0	0.10	0.03	0.01	0.17	0.20	0	0	0	0
Stdev	0.91	1.51	0.67	1.04	0.32	0.46	0.13	0	0	0.18	0.13	0.26	0.53	0.24	0	0	0	0
Prev(%)	70.20	80.80	49.65	71.23	57.72	49.23	28.87	0	0	23.67	15.52	12.18	15.52	17.51	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.33	0.53	0.20	0.64	0.16	0.17	0.05	0.03	0.02	0.08	0.07	0.06	0.05	0.15	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.76	1.32	0.54	1.87	0.44	0.47	0.10	0.06	0.03	0.11	0.09	0.07	0.19	0.48	0	0	0	0
Stdev	0.92	1.00	0.55	1.25	0.36	0.41	0.19	0.11	0.10	0.44	0.34	0.29	0.14	0.44	0	0	0	0
Prev(%)	65.19	76.34	40.99	67.00	50.38	55.95	30.22	28.22	22.38	21.84	22.93	17.59	25.52	29.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.10	0.22	0.07	0.22	0.15	0.08	0.02	0.08	0.03	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.29	0.72	0.22	0.81	0.44	0.26	0.05	0.06	0.04	0.03
Stdev	0.22	0.40	0.13	0.36	0.28	0.17	0.04	0.33	0.11	0.02
Prev(%)	56.76	70.59	62.79	77.14	78.57	80.00	63.64	61.29	62.50	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.18	0.18	0.02	0.04	0.43	0	0.07	0	0	0.01	0.01	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.26	0.55	0.06	0.13	1.32	0	0.18	0	0.01	0	0	0	0	0	0	0	0	0
Stdev	0.53	0.39	0.04	0.07	1.04	0	0.13	0.01	0.01	0.03	0.09	0.03	0.01	0	0	0	0	0.02
Prev(%)	50.00	54.04	16.67	41.18	51.06	0	50.00	6.25	12.00	9.15	2.70	8.33	3.13	0	0	0	0	0.18

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