HOMD ::Genus:Actinomyces

Genus: Actinomyces

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces
Lower rank member(s): show[+]

[Species:Actinomyces dentalis] [Species:Actinomyces gerencseriae] [Species:Actinomyces graevenitzii] [Species:Actinomyces israelii] [Species:Actinomyces johnsonii]
[Species:Actinomyces massiliensis] [Species:Actinomyces naeslundii] [Species:Actinomyces oricola] [Species:Actinomyces oris] [Species:Actinomyces radicidentis]
[Species:Actinomyces sp. HMT-170] [Species:Actinomyces sp. HMT-403] [Species:Actinomyces sp. HMT-414] [Species:Actinomyces sp. HMT-448] [Species:Actinomyces sp. HMT-525]
[Species:Actinomyces sp. HMT-896] [Species:Actinomyces sp. HMT-897] [Species:Actinomyces timonensis] [Species:Actinomyces viscosus]

LINKS: Ecology Home | Life Page: Actinomyces

Hide Legend

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Actinomyces

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	12.08	16.51	15.58	2.03	2.68	0.08	1.19	1.94	1.57	2.27	0.37	0.17	0.23	4.97	0.01	2.33	0.07	0.03
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.26	4.42	6.13	0.01	0.19	0.08	0.17	0.40	0.17	0.31	0.02	0.01	0.01	4.97	0	0	0	0
90^thp	21.26	30.57	31.05	5.09	6.54	0.08	2.79	4.32	4.27	5.10	1.06	0.48	0.11	4.97	0.02	5.79	0.10	0.02
Stdev	8.20	11.17	9.62	3.40	3.86	0	1.80	2.36	2.41	2.10	0.57	0.21	1.00	0	0.01	6.13	0.38	0.24
Prev(%)	95.83	98.99	100.00	66.67	78.33	100.00	62.50	85.71	81.82	98.35	9.23	8.70	10.00	0	0	12.50	1.06	1.60

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	9.90	11.01	0.70	1.97	1.29	0.97	2.29	1.55	2.54	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.33	1.33	0	0.08	0.09	0.11	0.12	0.17	0.09	0
90^thp	22.27	24.68	2.59	4.78	2.67	2.02	4.09	4.38	6.24	0
Stdev	10.65	10.18	1.31	3.14	2.09	1.26	4.29	2.14	3.94	0.01
Prev(%)	98.70	97.40	80.52	94.81	96.10	93.51	94.81	96.10	96.10	5.20

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.22	3.58	0.19	0.74	0.63	0.37	0.85	0.70	1.04	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.28	0.44	0	0	0.03	0.03	0.05	0.02	0.03	0
90^thp	8.70	8.04	0.37	1.49	1.40	0.83	1.71	1.72	2.34	0
Stdev	5.36	4.85	0.52	1.52	1.23	0.52	1.30	1.22	1.77	0
Prev(%)	99.32	99.32	56.08	88.51	93.92	92.57	94.59	91.22	91.22	2.80

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.40	9.99	1.20	2.35	1.33	0.77	1.99	1.50	2.13	0.12	0.12	0.09	0.42	0.41	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.92	2.22	0.01	0.07	0.09	0	0.13	0.07	0.06	0	0	0	0	0	0	0	0	0
90^thp	18.52	20.98	3.87	6.69	2.85	1.80	4.68	3.60	4.35	0.30	0.22	0.17	1.31	1.26	0	0	0	0
Stdev	9.26	8.36	2.04	3.61	2.10	1.11	2.82	2.32	3.07	0.30	0.56	0.35	0.92	0.93	0	0	0	0
Prev(%)	94.04	96.03	91.61	94.52	93.29	87.69	95.24	92.00	95.48	52.67	47.70	35.41	54.60	55.30	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.55	10.01	2.18	3.39	2.24	1.15	2.57	1.86	2.51	0.21	0.31	0.31	0.71	0.70	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.20	1.69	0	0.21	0.23	0.12	0.17	0.08	0.19	0	0	0	0	0	0	0	0	0
90^thp	18.76	22.56	5.26	8.44	4.75	2.68	5.91	4.75	6.00	0.45	0.37	0.40	1.37	1.26	0	0	0	0
Stdev	8.68	8.45	5.50	4.47	2.55	1.50	3.23	2.57	2.94	0.67	1.46	1.92	2.03	2.60	0	0	0	0
Prev(%)	99.51	99.02	79.51	98.26	97.44	98.51	95.64	96.35	97.57	59.00	46.18	42.59	67.59	66.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	5.76	7.07	0.63	0.82	0.79	0.68	0.97	0.79	0.82	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.31	0.56	0.02	0.06	0.05	0.02	0.09	0.06	0.02	0
90^thp	13.74	21.95	1.40	2.50	1.65	1.79	2.25	1.62	1.72	0.01
Stdev	8.07	9.92	1.40	1.07	0.63	0.96	1.31	1.39	1.54	0.02
Prev(%)	100.00	100.00	95.35	100.00	100.00	100.00	100.00	100.00	100.00	20.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	10.64	14.84	13.00	2.50	4.71	0.54	2.84	3.89	5.88	11.90	0.43	0.12	0.09	3.76	0.04	0.99	0.15	0.03
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.21	3.35	3.59	0	0.32	0.54	0.36	0.12	0.95	2.94	0	0	0	3.76	0	0	0	0
90^thp	19.31	29.64	28.69	5.64	11.38	0.54	7.07	7.49	12.68	24.14	0.33	0.22	0.07	3.76	0	0.40	0.05	0
Stdev	9.09	11.02	9.89	4.18	6.18	0	4.47	3.10	7.51	9.02	2.00	0.33	0.41	0	0.15	3.54	1.10	0.52
Prev(%)	95.83	99.75	100.00	82.35	98.40	100.00	100.00	87.50	100.00	99.53	24.32	50.00	34.38	100.00	9.09	21.43	13.13	3.27

[Species:Actinomyces dentalis]	[Species:Actinomyces gerencseriae]	[Species:Actinomyces graevenitzii]	[Species:Actinomyces israelii]	[Species:Actinomyces johnsonii]
[Species:Actinomyces massiliensis]	[Species:Actinomyces naeslundii]	[Species:Actinomyces oricola]	[Species:Actinomyces oris]	[Species:Actinomyces radicidentis]
[Species:Actinomyces sp. HMT-170]	[Species:Actinomyces sp. HMT-403]	[Species:Actinomyces sp. HMT-414]	[Species:Actinomyces sp. HMT-448]	[Species:Actinomyces sp. HMT-525]
[Species:Actinomyces sp. HMT-896]	[Species:Actinomyces sp. HMT-897]	[Species:Actinomyces timonensis]	[Species:Actinomyces viscosus]

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