HOMD ::Species:Actinomyces gerencseriae

Species: Actinomyces gerencseriae (HMT-0618) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces gerencseriae

LINKS: Ecology Home | HMT-0618: [Body Sites Data] [Taxon Description] | Life Page: Actinomyces gerencseriae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Actinomyces gerencseriae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.58	0.36	1.81	0.04	0.02	0	0.01	0	0	0	0.01	0	0	0.02	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.02	0.06	0	0	0	0	0	0	0	0	0	0	0.02	0	0	0	0
90^thp	1.54	0.71	4.31	0.01	0.03	0	0.02	0	0	0	0.01	0.01	0	0.02	0	0.01	0	0
Stdev	0.61	0.92	4.98	0.15	0.14	0	0.02	0	0	0.01	0.01	0.01	0	0	0	0.01	0	0
Prev(%)	75.00	68.10	54.17	6.67	1.55	0	0	0	0	0.47	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.23	0.14	0.01	0	0.01	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.66	0.25	0	0	0	0	0	0	0	0
Stdev	0.53	0.38	0.09	0.01	0.03	0.07	0.02	0	0	0
Prev(%)	59.74	61.04	2.60	7.79	6.49	9.09	5.20	3.90	1.30	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.15	0.09	0.01	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.44	0.17	0	0	0	0	0	0	0	0
Stdev	0.31	0.28	0.06	0.02	0.02	0.01	0.01	0	0.01	0
Prev(%)	62.16	48.65	0.68	9.46	3.38	3.38	4.73	2.03	2.03	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.29	0.12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.63	0.22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.71	0.40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	70.20	56.95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.36	0.16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.83	0.34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.77	0.49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	83.21	62.93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.04	0.02	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.07	0.05	0	0	0	0	0	0	0	0
Stdev	0.13	0.03	0.01	0	0	0	0	0	0	0
Prev(%)	63.51	58.82	13.95	17.14	14.29	2.00	6.06	0	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.61	0.38	2.08	0.05	0.02	0	0	0	0	0	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.62	0.80	5.31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.70	1.05	5.80	0.19	0.17	0	0	0	0	0.01	0.09	0	0	0	0	0	0	0
Prev(%)	91.67	78.03	91.67	11.77	6.65	0	0	0	0	0.70	0.90	0	0	0	0	0	0	0

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