HOMD ::Species:Actinomyces graevenitzii

Species: Actinomyces graevenitzii (HMT-0866) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces graevenitzii

LINKS: Ecology Home | HMT-0866: [Body Sites Data] [Taxon Description] | Life Page: Actinomyces graevenitzii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Actinomyces graevenitzii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.01	0.01	0.03	0.11	0.05	0.37	1.91	1.49	2.20	0.06	0.01	0.01	0.07	0	0.01	0.01	0.02
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0.01	0.05	0.05	0.32	0.14	0.25	0	0	0	0.07	0	0	0	0
90^thp	0.02	0.01	0.02	0.11	0.30	0.05	1.01	4.31	4.22	5.03	0.08	0.02	0.03	0.07	0	0.02	0.04	0.01
Stdev	0.01	0.08	0.01	0.05	0.21	0	0.43	2.37	2.37	2.10	0.16	0.01	0.02	0	0	0.02	0.02	0.18
Prev(%)	4.17	2.03	0	13.33	20.74	100.00	50.00	85.71	81.82	97.40	3.08	0	3.33	0	0	0	0	1.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.01	0	0.02	0.14	0.93	0.46	1.78	1.46	2.51	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0.03	0
90^thp	0	0	0.07	0.37	2.16	1.10	3.79	4.31	6.16	0
Stdev	0.04	0	0.05	0.33	2.04	0.99	3.12	2.17	3.95	0
Prev(%)	3.90	3.90	20.78	59.74	85.71	79.22	85.71	88.31	93.51	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.02	0.01	0.02	0.08	0.47	0.21	0.76	0.62	1.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0.01	0	0	0
90^thp	0	0	0.03	0.29	1.05	0.44	1.62	1.64	2.34	0
Stdev	0.17	0.06	0.10	0.16	1.11	0.48	1.19	1.11	1.77	0
Prev(%)	3.38	4.73	16.22	50.00	81.76	69.59	89.86	85.14	87.84	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.04	0	1.00	0.46	1.77	1.36	2.13	0	0	0	0.08	0.08	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0.07	0.01	0.06	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.07	0	2.28	1.48	4.41	3.43	4.35	0	0	0	0.06	0.10	0	0	0	0
Stdev	0	0	0.17	0	2.06	1.01	2.35	2.11	3.07	0	0	0	0.33	0.50	0	0	0	0
Prev(%)	0	0	32.87	0	88.59	73.08	91.96	90.00	95.48	0	0	0	17.24	17.51	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.25	1.62	0.62	2.20	1.70	2.47	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.06	0	0.08	0.05	0.15	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.75	3.81	1.61	5.57	4.49	6.00	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0.45	2.33	1.11	2.74	2.38	2.94	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	61.04	92.58	85.12	91.59	93.19	95.86	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0.03	0.08	0.32	0.57	0.91	0.69	0.81	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.01	0.01	0.07	0.05	0	0
90^thp	0.01	0.01	0.10	0.28	1.09	1.75	2.15	1.05	1.71	0
Stdev	0.01	0.01	0.06	0.14	0.44	0.96	1.31	1.32	1.54	0
Prev(%)	29.73	26.47	58.14	71.43	92.86	96.00	96.97	100.00	92.50	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0	0.02	0.14	0.05	0.35	1.38	1.77	2.32	0.02	0	0	0	0	0	0.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.05	0.05	0.04	0.14	0.24	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.08	0.41	0.05	0.92	2.91	6.28	5.49	0	0	0	0	0	0	0	0
Stdev	0.01	0.09	0	0.06	0.29	0	0.41	1.70	2.65	2.25	0.13	0	0.02	0	0	0	0.09	0.17
Prev(%)	4.17	3.03	4.17	23.53	52.93	100.00	100.00	87.50	100.00	97.42	3.60	0	3.13	0	0	0	3.03	1.82

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