HOMD ::Species:Actinomyces johnsonii

Species: Actinomyces johnsonii (HMT-0849) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces johnsonii

LINKS: Ecology Home | HMT-0849: [Body Sites Data] [Taxon Description] | Life Page: Actinomyces johnsonii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Actinomyces johnsonii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.45	0.34	0.44	0.09	0.04	0	0.03	0	0	0	0.01	0	0	0.05	0	0.01	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.08	0.07	0.03	0	0	0	0	0	0	0	0	0	0	0.05	0	0	0	0
90^thp	1.12	0.72	0.98	0.08	0.09	0	0.07	0	0	0	0.01	0.01	0	0.05	0	0.02	0	0
Stdev	0.50	0.41	0.79	0.28	0.06	0	0.04	0	0	0.01	0.01	0.01	0.01	0	0	0.03	0	0
Prev(%)	70.83	72.91	45.83	6.67	3.72	0	0	0	0	0.71	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.09	0.08	0	0.02	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.34	0.21	0	0.04	0.01	0	0	0	0	0
Stdev	0.18	0.24	0	0.09	0.03	0	0.02	0	0	0
Prev(%)	37.66	32.47	2.60	20.78	12.99	3.90	2.60	2.60	0	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.20	0.12	0.02	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.48	0.30	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.42	0.25	0.14	0	0	0	0	0	0	0	0	0.08	0	0	0	0	0	0
Prev(%)	66.89	64.90	20.28	0	0	0	0	0	0	0	0	4.53	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.68	0.87	0.03	0	0	0	0.06	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.69	1.89	0.07	0	0	0	0.05	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.30	1.93	0.12	0	0	0	0.67	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	93.58	92.19	22.22	0	0	0	22.43	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.08	0.07	0.01	0.01	0.03	0	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.19	0.19	0.02	0.02	0.05	0.01	0	0	0	0
Stdev	0.17	0.11	0.03	0.01	0.07	0	0.05	0	0	0
Prev(%)	71.62	79.41	44.19	45.71	64.29	24.00	18.18	0	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.36	0.25	0.37	0.08	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.08	0.63	0.89	0.04	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.49	0.43	0.80	0.30	0.10	0	0	0	0	0.01	0	0	0	0	0	0	0	0
Prev(%)	83.33	84.60	58.33	35.29	16.22	0	12.50	0	0	0.94	0	0	0	0	0	0	0	0

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