HOMD ::Genus:Aggregatibacter

Genus: Aggregatibacter

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter
Lower rank member(s): show[+]

[Species:Aggregatibacter actinomycetemcomitans] [Species:Aggregatibacter aphrophilus] [Species:Aggregatibacter kilianii] [Species:Aggregatibacter segnis] [Species:Aggregatibacter sp. HMT-458]
[Species:Aggregatibacter sp. HMT-513] [Species:Aggregatibacter sp. HMT-898] [Species:Aggregatibacter sp. HMT-949]

LINKS: Ecology Home | Life Page: Aggregatibacter

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Aggregatibacter

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.36	1.97	0.57	1.07	0.92	0.22	1.57	0.16	0.29	0.28	0.05	0.03	0.06	0.20	0	0.19	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.23	0.16	0	0.29	0.23	0.22	0.29	0.01	0.04	0.04	0	0	0	0.20	0	0	0	0
90^thp	2.90	4.48	1.81	2.92	1.77	0.22	3.94	0.29	0.58	0.59	0.12	0.05	0.06	0.20	0	0.48	0.01	0.01
Stdev	1.14	2.40	1.21	1.23	0.73	0	1.77	0.13	0.25	0.27	0.07	0.06	0.23	0	0	0.50	0.03	0.07
Prev(%)	75.00	84.81	33.33	40.00	43.03	0	62.50	28.57	18.18	34.04	1.54	0	6.67	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.70	1.96	1.24	0.92	0.24	0.94	0.21	0.76	0.07	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.04	0	0.03	0	0.06	0	0	0	0
90^thp	4.13	5.27	3.26	1.92	0.79	2.48	0.58	1.30	0.15	0
Stdev	2.10	2.25	2.88	1.76	0.38	1.14	0.37	2.62	0.18	0
Prev(%)	87.16	93.92	83.78	92.57	74.32	93.92	77.70	75.00	59.46	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.18	0.26	0.04	0.04	0	0.09	0.01	0.11	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.34	0.56	0.03	0.07	0	0.25	0	0.03	0	0	0	0	0	0	0	0	0	0
Stdev	0.47	0.66	0.21	0.13	0.03	0.19	0.11	1.00	0	0	0	0.01	0	0	0	0	0	0
Prev(%)	66.89	74.83	23.78	43.15	4.70	50.00	8.33	20.67	0	0	0	0.57	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.17	2.70	0.29	0.91	0.21	1.03	0.29	0.54	0.03	0	0.18	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.03	0	0	0	0.06	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	5.90	7.14	0.64	2.43	0.54	2.60	0.25	0.61	0.07	0	0.12	0	0	0	0	0	0	0
Stdev	2.99	3.82	0.92	1.66	0.39	1.38	2.67	3.07	0.08	0	1.54	0	0	0	0	0	0	0
Prev(%)	90.62	92.19	53.09	83.87	67.01	92.26	42.99	65.45	33.09	0	25.80	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.93	0.96	0.28	0.77	0.59	0.23	0.15	0.12	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.01	0	0	0.01	0	0	0	0	0
90^thp	3.17	3.63	0.61	1.00	1.13	0.62	0.09	0.36	0.15	0
Stdev	1.66	1.91	0.75	2.50	1.70	0.51	0.59	0.28	0.13	0
Prev(%)	86.49	94.12	79.07	91.43	100.00	88.00	78.79	80.64	67.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.26	1.97	0.53	0.74	0.54	0	1.72	0.10	0.09	0.05	0.01	0.01	0.04	0	0	0.12	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.06	0.01	0	0	0	0	0.09	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.60	4.87	1.73	2.60	1.49	0	4.76	0.29	0.13	0.13	0	0	0	0	0	0	0	0
Stdev	1.37	2.86	1.01	1.58	0.98	0	2.51	0.22	0.26	0.29	0.03	0.06	0.19	0	0	0.44	0.04	0.05
Prev(%)	95.83	90.15	45.83	41.18	70.75	0	100.00	37.50	40.00	46.48	3.15	8.33	6.25	0	0	7.14	1.01	0.36

[Species:Aggregatibacter actinomycetemcomitans]	[Species:Aggregatibacter aphrophilus]	[Species:Aggregatibacter kilianii]	[Species:Aggregatibacter segnis]	[Species:Aggregatibacter sp. HMT-458]
[Species:Aggregatibacter sp. HMT-513]	[Species:Aggregatibacter sp. HMT-898]	[Species:Aggregatibacter sp. HMT-949]

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