HOMD ::Species:Aggregatibacter aphrophilus

Species: Aggregatibacter aphrophilus (HMT-0545) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter aphrophilus

LINKS: Ecology Home | HMT-0545: [Body Sites Data] [Taxon Description] | Life Page: Aggregatibacter aphrophilus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Aggregatibacter aphrophilus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.44	0.49	0.02	0.10	0.16	0.04	0.37	0.04	0.05	0.05	0.01	0.01	0.04	0.01	0	0.01	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.03	0	0.04	0.03	0.04	0.04	0	0.01	0.01	0	0	0	0.01	0	0	0	0
90^thp	1.09	1.04	0.06	0.18	0.33	0.04	0.82	0.07	0.07	0.12	0.03	0.03	0.02	0.01	0	0.03	0	0
Stdev	0.48	1.04	0.05	0.07	0.15	0	0.49	0.04	0.06	0.06	0.02	0.03	0.17	0	0	0.02	0.01	0.04
Prev(%)	58.33	54.68	0	6.67	8.67	0	25.00	0	4.55	6.38	0	0	6.67	0	0	0	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.19	0.08	0	0	0	0.02	0.02	0.07	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.56	0.21	0	0	0	0.04	0	0.01	0	0
Stdev	0.55	0.25	0.01	0.01	0.01	0.07	0.17	0.51	0	0
Prev(%)	27.03	21.62	2.03	7.43	6.76	18.92	5.41	12.84	2.70	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Neither HMT-545 nor HMT-720 were present singularly so these reads were split evenly at this site (PTO).

Because HMT-720 is not present individually, all equidistant reads were assigned to HMT-545 at this body site (SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0.16	0.02	0.01	0	0.01	0.01	0.05	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.24	0.20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.43	0.63	0.17	0.08	0.03	0.08	0.11	0.50	0	0	0	0	0	0	0	0	0	0
Prev(%)	45.03	44.37	3.50	6.85	4.70	5.38	8.33	10.00	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Because HMT-720 is not present individually, all equidistant reads were assigned to HMT-545 at these sites (PTO,SAL,SUBP,SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.03	1.28	0.18	0.12	0.03	0.27	0	0.36	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	2.89	3.58	0.37	0.25	0.07	0.61	0	0.21	0	0	0	0	0	0	0	0	0	0
Stdev	2.20	3.22	0.77	0.41	0.14	0.78	0	2.96	0	0	0	0	0	0	0	0	0	0
Prev(%)	71.61	71.46	43.70	37.72	23.27	60.42	0	41.12	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.24	0.07	0.07	0.34	0.03	0.03	0.01	0.03	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.78	0.18	0.04	0.12	0.07	0.05	0.01	0.05	0.02	0
Stdev	0.76	0.15	0.34	1.78	0.07	0.10	0.05	0.10	0.02	0
Prev(%)	59.46	64.71	44.19	74.29	64.29	58.00	39.39	45.16	42.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.35	0.41	0	0	0.03	0	0.22	0.05	0.01	0	0	0.01	0.04	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.82	0.65	0	0.01	0.03	0	0.46	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.53	1.35	0.01	0.01	0.16	0	0.25	0.20	0.03	0.01	0.01	0.04	0.18	0	0	0	0	0.04
Prev(%)	66.67	47.98	4.17	17.65	15.16	0	75.00	6.25	8.00	3.76	0.90	8.33	6.25	0	0	0	0	0.18

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