HOMD ::Species:Aggregatibacter segnis

Species: Aggregatibacter segnis (HMT-0762) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter segnis

LINKS: Ecology Home | HMT-0762: [Body Sites Data] [Taxon Description] | Life Page: Aggregatibacter segnis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Aggregatibacter segnis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.28	0.13	0.26	0.14	0.04	0.16	0.02	0.05	0.05	0.01	0	0	0.03	0	0.02	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.02	0.02	0	0.04	0.04	0.04	0.03	0	0.01	0.01	0	0	0	0.03	0	0	0	0
90^thp	0.30	0.69	0.39	0.82	0.29	0.04	0.35	0.04	0.11	0.10	0.01	0.01	0	0.03	0	0.06	0	0
Stdev	0.17	0.37	0.36	0.39	0.11	0	0.15	0.02	0.05	0.05	0.01	0.01	0	0	0	0.06	0.01	0
Prev(%)	45.83	64.56	16.67	20.00	11.15	0	0	0	4.55	11.11	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to A. segnis, A. sp. HMT 512, and A. sp. HMT 513 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.13	0.15	0	0.02	0.01	0.06	0.01	0.04	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.34	0.33	0.01	0.04	0.03	0.20	0.03	0.04	0.01	0
Stdev	0.37	0.41	0.02	0.08	0.05	0.12	0.05	0.27	0.05	0
Prev(%)	42.57	50.00	10.81	31.08	31.08	49.32	29.05	30.41	20.95	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.05	0.04	0.02	0	0	0.04	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.15	0.11	0.02	0	0	0.09	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.12	0.11	0.12	0	0	0.12	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	45.70	31.13	20.28	0	0	29.23	0	0	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Neither HMT-512 nor HMT-762 were present singularly so these reads were split evenly at these sites (AKE,HPA,LRC,PTO,TDO).Because HMT-512 is not present individually, all equidistant reads were assigned to HMT-762 at these sites (BMU,SAL,SUBP,SUPP,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.49	0.41	0.05	0.24	0.04	0.32	0.29	0.09	0.01	0	0.03	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.25	1.20	0.08	0.59	0.10	0.92	0.25	0.12	0.04	0	0.01	0	0	0	0	0	0	0
Stdev	1.08	0.88	0.19	0.85	0.10	0.57	2.67	0.42	0.04	0	0.35	0	0	0	0	0	0	0
Prev(%)	75.31	69.02	30.62	54.09	41.43	68.16	42.99	51.09	33.09	0	15.92	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.02	0.06	0.01	0.02	0.02	0.01	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.02	0.04	0.01	0.03	0.01	0.04	0	0.01	0	0
Stdev	0.08	0.32	0.07	0.06	0.11	0.03	0.02	0.01	0.01	0
Prev(%)	25.68	47.06	37.21	48.57	28.57	36.00	15.15	22.58	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.34	0.27	0.50	0.03	0	0.07	0.04	0.02	0.02	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.42	1.00	0.86	1.83	0.09	0	0.23	0.14	0.04	0.03	0	0	0	0	0	0	0	0
Stdev	0.32	0.73	0.74	1.22	0.10	0	0.12	0.10	0.06	0.11	0	0	0	0	0	0	0	0
Prev(%)	50.00	54.55	20.83	35.29	23.40	0	37.50	18.75	16.00	22.54	0.45	0	0	0	0	0	0	0

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