HOMD ::Species:Aggregatibacter sp. HMT-458

Species: Aggregatibacter sp. HMT-458 (HMT-0458) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter sp. HMT-458

LINKS: Ecology Home | HMT-0458: [Body Sites Data] [Taxon Description] | Life Page: Aggregatibacter sp. HMT-458

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Aggregatibacter sp. HMT-458

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.33	0.52	0.14	0.29	0.34	0.08	0.42	0.05	0.10	0.09	0.01	0.01	0	0.07	0	0.13	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.03	0.03	0	0.09	0.07	0.08	0.08	0.01	0.01	0.01	0	0	0	0.07	0	0	0	0
90^thp	0.86	1.34	0.32	0.57	0.62	0.08	0.84	0.10	0.15	0.19	0.02	0.01	0.01	0.07	0	0.31	0	0
Stdev	0.45	0.68	0.38	0.32	0.38	0	0.55	0.04	0.12	0.07	0.02	0.01	0.01	0	0	0.34	0.01	0.01
Prev(%)	45.83	72.15	16.67	26.67	36.22	0	62.50	28.57	13.64	27.66	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to A. sp. HMT 458 and A. sp. HMT 898 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.29	0.40	0.53	0.40	0.07	0.29	0.06	0.18	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.98	1.13	1.24	0.77	0.19	0.70	0.13	0.39	0.05	0
Stdev	0.43	0.54	1.39	0.87	0.16	0.46	0.12	0.54	0.04	0
Prev(%)	68.24	84.46	78.38	89.19	64.19	89.86	66.22	66.89	48.65	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.04	0	0.03	0	0.04	0	0.01	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0.12	0	0.06	0	0.10	0	0.01	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.14	0	0.11	0	0.11	0	0.05	0	0	0	0	0	0	0	0	0	0
Prev(%)	0	42.38	0	39.04	0	33.85	0	13.33	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.33	0.67	0	0.53	0.11	0.39	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.02	1.91	0	1.38	0.27	1.03	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.62	1.03	0	1.24	0.23	0.76	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	68.39	82.93	0	69.48	53.20	76.19	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.47	0.59	0.09	0.21	0.44	0.08	0.10	0.04	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.32	1.53	0.23	0.49	0.73	0.23	0.05	0.10	0.02	0
Stdev	1.27	1.33	0.21	0.38	1.48	0.13	0.49	0.09	0.01	0
Prev(%)	68.92	76.47	62.79	85.71	89.29	82.00	63.64	54.84	50.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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