HOMD ::Class:Alphaproteobacteria

Class: Alphaproteobacteria

Full Lineage: Bacteria; Pseudomonadota; Alphaproteobacteria
Lower rank member(s): [Order:Caulobacterales] [Order:Hyphomicrobiales] [Order:Rhodobacterales] [Order:Rhodospirillales] [Order:Sphingomonadales]
Genera:

LINKS: Ecology Home | Life Page: Alphaproteobacteria

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Class: Alphaproteobacteria

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0	0	0	0	0	0	0	0	0	0.01	0.01	0.02	1.18	0.06	0.06	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	1.18	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0.02	0.03	0.03	1.18	0.15	0.13	0.01	0.01
Stdev	0.11	0	0	0	0	0	0	0	0	0	0.01	0.01	0.05	0	0.10	0.06	0.04	0.01
Prev(%)	0	0.25	0	0	0	0	0	0	0	0	0	0	6.67	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.03	0.04	0.01	0.13	0.04	0	0	0.11	0.12	0.16	1.28	0.94	0.03	0.03	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0.10	0.03	0	0	0.18	0.23	0.21	3.34	2.35	0.10	0.04	0	0
Stdev	0	0	0.30	0.39	0.03	0.82	0.23	0	0	0.50	0.62	0.69	2.70	2.15	0.06	0.11	0.01	0
Prev(%)	0	0	6.29	10.27	10.07	23.08	14.29	0	0	48.33	52.01	50.99	82.76	69.12	32.39	24.32	7.89	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.03	0.07	0.01	0.09	0.07	0.22	0.03	0.01	0.23	0.33	0.44	1.50	1.38	0.01	0.02	0.01	0.03
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.04	0.05	0.16	0	0	0.44	0.56	1.09	4.02	3.23	0.03	0.02	0.01	0
Stdev	0.18	0.35	0.63	0.07	0.61	0.55	1.24	0.26	0.09	1.02	1.69	1.47	3.51	3.71	0.09	0.14	0.12	0.41
Prev(%)	7.16	4.63	6.42	6.70	14.07	14.88	22.43	5.84	1.95	47.51	47.13	55.86	81.38	78.00	17.24	19.13	11.52	0.73

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0.23	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.01	0	0	0	0	0
Stdev	0.01	0	0	0	0.01	0	0	1.31	0	0
Prev(%)	12.16	5.88	13.95	14.29	17.86	4.00	18.18	16.13	7.50	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.05	0	0	0	0	0	0	0	0	0	0	0	0	1.29	0.03	0.05	0.02	0.04
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	1.29	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	1.29	0	0.19	0	0
Stdev	0.23	0	0	0	0.05	0	0	0	0	0	0.03	0	0.01	0	0.09	0.09	0.14	0.48
Prev(%)	4.17	0.51	0	0	1.33	0	0	0	0	0.47	2.25	0	9.38	100.00	9.09	28.57	5.05	4.00

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