HOMD ::Species:Arachnia rubra

Species: Arachnia rubra (HMT-0194) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Arachnia; Arachnia rubra

LINKS: Ecology Home | HMT-0194: [Body Sites Data] [Taxon Description] | Life Page: Arachnia rubra

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Arachnia rubra

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.00	0.87	0.03	0.14	0.02	0	0.02	0	0	0	0.01	0.01	0.01	0.05	0	0.02	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.05	0	0	0	0
90^thp	5.10	2.27	0.11	0	0.03	0	0.04	0	0	0	0.04	0.01	0.01	0.05	0	0.05	0	0
Stdev	4.23	2.39	0.08	0.53	0.10	0	0.03	0	0	0.03	0.02	0.02	0.03	0	0	0.06	0.01	0
Prev(%)	50.00	42.28	4.17	6.67	3.10	0	0	0	0	1.65	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.27	0.45	0	0.03	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.05	1.15	0	0.02	0.01	0.03	0	0	0	0
Stdev	0.64	1.33	0.02	0.14	0.01	0.06	0.01	0.01	0.01	0
Prev(%)	36.36	40.26	6.49	15.58	10.39	14.29	3.90	3.90	3.90	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to A. propionica and A. rubra were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.28	0.31	0.01	0.01	0.01	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.79	0.74	0	0.03	0.01	0.03	0.01	0.01	0	0
Stdev	0.43	0.59	0.04	0.03	0.05	0.02	0.03	0.02	0	0
Prev(%)	83.78	85.81	4.05	26.35	20.95	29.73	12.16	12.16	3.38	2.10

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.52	0.45	0.03	0.01	0	0	0.01	0	0	0	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.10	1.32	0	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.69	1.28	0.20	0.09	0	0	0.20	0	0	0	0.13	0	0	0	0	0	0	0
Prev(%)	35.76	41.06	9.09	17.81	0	0	3.87	0	0	0	2.59	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.34	0.47	0.03	0.02	0.01	0	0.02	0	0	0	0.03	0	0.10	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.96	1.33	0.06	0.06	0.03	0	0	0	0	0	0	0	0.01	0	0	0	0	0
Stdev	1.00	1.30	0.14	0.09	0.04	0	0.14	0	0	0	0.42	0	0.98	0	0	0	0	0
Prev(%)	40.25	40.98	14.57	24.32	15.09	0	7.79	0	0	0	5.41	0	11.03	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.27	0.21	0	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.65	0.21	0.01	0.02	0	0	0	0	0	0
Stdev	0.87	0.69	0.01	0.02	0.01	0	0	0	0.01	0
Prev(%)	31.08	50.00	18.61	28.57	10.71	32.00	6.06	9.68	17.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.31	1.00	0.01	0.21	0.02	0	0.01	0	0	0	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	6.85	2.56	0	0.32	0	0	0.02	0	0	0	0	0	0	0	0	0	0	0
Stdev	4.91	2.81	0.03	0.70	0.13	0	0.03	0	0	0.02	0.06	0	0	0	0	0.02	0	0
Prev(%)	58.33	44.70	8.33	11.77	9.04	0	12.50	0	0	1.64	2.25	4.17	0	0	0	7.14	0	0

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