HOMD ::Class:Bacteroidia

Class: Bacteroidia

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Full Lineage: Bacteria; Bacteroidota; Bacteroidia
Lower rank member(s): [Order:Bacteroidales]
Genera:

LINKS: Ecology Home | Life Page: Bacteroidia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Class: Bacteroidia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	10.34	4.94	19.66	8.74	3.67	7.74	20.16	19.73	21.73	13.52	12.09	0.31	0.20	4.19	2.35	1.73	6.32	85.52
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.49	0.39	4.81	0.83	0.50	7.74	12.32	13.86	10.97	5.61	0.13	0.05	0.03	4.19	0.11	0.03	0.03	65.68
90^thp	21.62	12.02	33.81	20.40	8.11	7.74	27.65	28.16	37.14	21.93	38.07	0.57	0.44	4.19	6.32	5.28	17.77	98.10
Stdev	7.28	4.96	10.90	9.16	3.52	0	7.66	6.48	10.77	7.09	21.16	0.52	0.32	0	4.38	3.49	13.65	15.93
Prev(%)	100.00	96.96	100.00	86.67	89.16	100.00	100.00	100.00	100.00	100.00	21.54	8.70	16.67	0	25.00	25.00	24.47	100.00

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	8.74	4.14	8.54	5.26	10.15	15.58	13.48	14.43	13.45	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.47	0.09	0.04	0.65	3.59	8.43	6.05	6.21	5.10	0
90^thp	18.86	8.77	23.26	13.66	17.94	24.11	20.50	25.84	23.22	0.04
Stdev	8.06	4.26	10.62	4.82	5.86	6.61	6.51	7.85	7.14	0.02
Prev(%)	100.00	96.10	94.81	100.00	100.00	100.00	100.00	100.00	100.00	25.97

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	17.86	9.35	12.92	7.90	14.03	24.60	20.59	20.40	18.09	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.86	1.32	0.14	1.47	4.69	12.78	8.95	8.09	7.30	0
90^thp	33.57	17.09	33.34	18.11	25.07	36.51	34.67	36.28	28.89	0.01
Stdev	12.01	7.21	13.59	6.69	7.98	9.46	10.08	11.24	8.38	0.01
Prev(%)	100.00	100.00	98.65	100.00	100.00	100.00	100.00	100.00	100.00	14.69

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.82	4.62	9.34	4.55	11.25	17.01	17.89	17.76	13.65	0.46	0.23	0.09	0.61	0.76	0.85	0.78	0.59	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.73	0.20	0.15	0.53	3.39	8.28	7.25	7.20	6.01	0	0	0	0	0	0	0	0	0
90^thp	20.50	10.54	27.43	10.16	18.63	27.30	28.77	28.90	21.18	1.17	0.39	0.15	1.55	1.87	1.14	0.70	0.16	0
Stdev	8.09	4.74	10.79	4.77	6.11	8.34	8.34	8.34	5.83	1.22	1.07	0.51	1.48	1.64	3.17	3.85	3.46	0.27
Prev(%)	100.00	98.01	97.90	98.63	100.00	99.23	99.70	100.00	100.00	70.33	55.17	45.04	62.64	64.52	59.16	44.59	34.21	0.65

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	12.65	5.29	17.60	8.73	12.23	19.12	14.82	18.83	11.21	0.26	0.72	0.44	1.55	1.20	1.04	0.38	0.59	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.33	0.21	0.27	1.10	3.47	8.46	5.17	7.23	3.14	0	0	0	0	0	0	0	0	0
90^thp	27.10	13.16	46.50	19.56	22.07	32.33	26.91	31.82	20.88	0.45	0.63	0.55	2.77	2.61	1.63	0.32	0.18	0
Stdev	10.00	5.46	18.45	8.22	7.55	9.09	8.43	10.11	7.32	0.90	2.88	1.66	5.08	3.23	3.46	2.30	3.92	0
Prev(%)	100.00	98.54	96.30	99.75	99.74	100.00	100.00	100.00	100.00	54.02	48.73	46.60	64.83	66.67	64.37	35.52	25.65	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	12.18	5.80	5.44	5.84	12.70	19.12	20.18	21.27	16.15	0.05
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.67	0.51	0.12	0.12	1.69	1.73	7.82	7.60	0.43	0
90^thp	27.65	13.28	13.11	15.91	26.84	42.89	30.88	38.21	30.43	0.16
Stdev	10.38	5.18	6.83	6.19	11.27	16.02	9.45	12.10	11.04	0.10
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	40.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	9.36	5.26	18.32	4.88	4.58	11.91	23.51	19.72	26.47	15.42	2.68	0.08	0.11	4.64	1.06	1.11	2.71	62.40
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.54	0.39	5.42	0.08	0.30	11.91	14.45	7.48	13.60	7.07	0	0	0	4.64	0	0	0	29.83
90^thp	18.57	12.59	32.58	6.34	11.13	11.91	35.29	29.41	45.21	25.14	5.71	0.32	0.34	4.64	2.11	2.31	6.10	88.78
Stdev	5.93	5.04	10.54	9.41	5.08	0	9.45	8.66	13.21	7.10	9.54	0.17	0.27	0	2.70	3.24	9.42	21.97
Prev(%)	100.00	98.48	100.00	94.12	98.94	100.00	100.00	100.00	100.00	100.00	42.79	50.00	40.63	100.00	63.64	35.71	44.44	100.00

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