HOMD ::Order:Bifidobacteriales

Order: Bifidobacteriales

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Bifidobacteriales
Lower rank member(s): [Family:Bifidobacteriaceae]
Genera:

LINKS: Ecology Home | Life Page: Bifidobacteriales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Order: Bifidobacteriales

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.01	0.27	0.01	0.02	0	0.06	0.01	0.03	0.03	0.06	0.06	0.03	0.06	19.57	11.67	10.53	0.28
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0.01	0	0.01	0.01	0	0.01	0	0	0	0.06	0	0	0	0.01
90^thp	0.01	0.01	1.25	0.02	0.05	0	0.13	0.02	0.07	0.06	0.09	0.10	0.09	0.06	54.79	28.20	45.51	0.43
Stdev	0.01	0.03	0.59	0.01	0.05	0	0.11	0.01	0.04	0.05	0.15	0.18	0.10	0	39.13	32.72	21.30	1.22
Prev(%)	4.17	4.30	25.00	6.67	1.24	0	0	0	9.09	12.77	1.54	4.35	3.33	0	25.00	25.00	35.11	30.93

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.04	0.14	0.08	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.12	0.03	0.02	0
Stdev	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.16	0.58	0.45	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21.13	16.22	13.16	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.04	0	0	0	0.02	0.01	0.02	0.04	0	0.02	0.15	0.03	0.14	0.37	3.79	3.97	3.96	0.10
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.03	0	0	0	0.04	0	0.03	0.03	0	0.01	0.05	0.01	0.24	0.49	10.74	10.66	7.73	0.16
Stdev	0.20	0	0	0.04	0.14	0.07	0.07	0.28	0	0.09	1.37	0.16	0.56	1.51	11.01	12.18	13.15	0.50
Prev(%)	15.56	0	0	3.97	12.53	7.44	14.64	13.38	0	12.26	19.75	11.42	26.21	35.33	47.70	41.53	36.13	45.01

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0	0	0	0	0	0	0	0	0
Stdev	0.02	0	0	0	0	0	0	0	0	0
Prev(%)	13.51	17.65	4.65	11.43	10.71	12.00	6.06	0	0	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0.27	0	0.03	0	0.03	0	0.04	0.01	0.02	0.04	0.03	0	10.32	6.93	9.45	0.25
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	1.24	0	0	0	0.09	0	0.05	0.04	0	0.08	0.03	0	16.04	1.27	42.90	0.53
Stdev	0.01	0.04	0.59	0.01	0.25	0	0.09	0	0.16	0.05	0.11	0.15	0.13	0	22.34	25.15	21.52	0.85
Prev(%)	4.17	6.06	33.33	5.88	9.84	0	25.00	0	20.00	16.43	8.11	20.83	18.75	0	45.45	35.71	34.34	66.00

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