HOMD ::Species:Campylobacter gracilis

Species: Campylobacter gracilis (HMT-0623) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter gracilis

LINKS: Ecology Home | HMT-0623: [Body Sites Data] [Taxon Description] | Life Page: Campylobacter gracilis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Campylobacter gracilis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.81	0.35	0.63	0.06	0.03	0	0.05	0.01	0.04	0	0	0	0	0.01	0	0.06	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.12	0.01	0.09	0	0	0	0.02	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	1.48	0.89	1.51	0.16	0.06	0	0.09	0.01	0.04	0.01	0.01	0.01	0	0.01	0	0.15	0	0
Stdev	0.53	0.46	0.51	0.12	0.10	0	0.03	0	0.15	0.01	0.01	0.01	0	0	0	0.13	0	0
Prev(%)	87.50	77.47	75.00	13.33	4.02	0	0	0	9.09	0.47	0	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.06	0.44	0.03	0.03	0	0.05	0.02	0.05	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0	0	0	0	0	0	0	0	0
90^thp	2.52	1.31	0.03	0.06	0.01	0.15	0.03	0.06	0	0
Stdev	1.14	0.69	0.13	0.07	0.01	0.07	0.14	0.20	0.01	0
Prev(%)	89.61	80.52	20.78	36.36	16.88	53.25	16.88	25.97	3.90	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.52	0.33	0.01	0.02	0	0.04	0.01	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.34	0.86	0	0.06	0	0.11	0	0.03	0	0
Stdev	0.61	0.56	0.09	0.06	0.02	0.08	0.04	0.09	0	0
Prev(%)	79.73	69.59	8.11	27.03	8.11	39.19	5.41	14.87	3.38	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.28	0.55	0.11	0.04	0	0.06	0.07	0.04	0	0.01	0.01	0	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.12	1.62	0.14	0.11	0	0.19	0.03	0.07	0	0	0	0	0	0	0	0	0	0
Stdev	1.44	0.81	0.78	0.11	0	0.10	0.85	0.13	0	0.03	0.03	0.04	0.07	0	0	0	0	0
Prev(%)	93.38	87.42	37.06	44.52	0	53.08	15.77	30.00	0	6.67	5.17	2.55	5.75	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.64	0.32	0.05	0.06	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.50	0.88	0.08	0.16	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.68	0.50	0.31	0.15	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	92.35	84.39	19.01	37.72	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.09	0.94	0.15	0.05	0.03	0.01	0.01	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.03	0	0	0	0	0	0	0	0
90^thp	2.34	2.07	0.19	0.18	0.08	0.03	0.02	0.01	0	0
Stdev	1.98	1.62	0.56	0.08	0.04	0.02	0.01	0.10	0	0
Prev(%)	93.24	94.12	67.44	85.71	75.00	76.00	54.55	38.71	12.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.01	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.10	0.04	0.04	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.04	0.03	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	41.67	26.77	33.33	0	1.33	0	0	0	0	0	0	0	0	0	0	0	0	0

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