HOMD ::Species:Campylobacter showae

Species: Campylobacter showae (HMT-0763) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter showae

LINKS: Ecology Home | HMT-0763: [Body Sites Data] [Taxon Description] | Life Page: Campylobacter showae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Campylobacter showae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.25	0.33	0.18	0.04	0.03	0	0.06	0.08	0.21	0.07	0.01	0	0	0.01	0	0.01	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.07	0.02	0.01	0	0	0	0.04	0.02	0.01	0	0	0	0	0.01	0	0	0	0
90^thp	0.54	0.87	0.55	0.10	0.06	0	0.10	0.18	0.49	0.15	0.01	0.01	0	0.01	0	0.03	0	0
Stdev	0.20	0.41	0.24	0.04	0.09	0	0.03	0.09	0.50	0.22	0.02	0	0	0	0	0.04	0.06	0.01
Prev(%)	79.17	83.29	29.17	13.33	5.57	0	12.50	42.86	31.82	27.19	1.54	0	0	0	0	12.50	1.06	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.81	0.72	0.27	0.05	0.05	0.38	0.14	0.24	0.06	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.71	1.83	0.48	0.11	0.15	0.98	0.51	0.72	0.13	0
Stdev	1.20	0.99	0.82	0.09	0.08	0.57	0.34	0.56	0.16	0.01
Prev(%)	88.31	84.42	46.75	54.55	49.35	84.42	50.65	63.64	36.36	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to C. rectus and C. showae were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.17	0.16	0.08	0.01	0.01	0.11	0.03	0.06	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.50	0.43	0.15	0.05	0.04	0.34	0.08	0.17	0.02	0
Stdev	0.27	0.27	0.26	0.03	0.03	0.18	0.09	0.15	0.06	0
Prev(%)	70.95	75.00	35.13	34.46	31.76	66.89	39.87	60.13	27.70	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.81	0.82	0.40	0.06	0.04	0.36	0.19	0.30	0.08	0	0.02	0	0.03	0.05	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	2.33	2.07	0.94	0.14	0.14	0.83	0.38	0.79	0.20	0	0	0	0	0	0	0	0	0
Stdev	1.16	1.29	1.16	0.10	0.07	0.55	0.64	0.59	0.21	0	0.16	0.03	0.15	0.58	0	0	0	0
Prev(%)	92.72	94.70	68.53	64.38	53.02	81.54	52.08	73.33	48.39	0	6.03	4.53	7.47	6.45	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Neither HMT-748 nor HMT-763 were present singularly so these reads were split evenly at these sites (AKE,SAL,SUBP,SUPP).

Because HMT-748 is not present individually, all equidistant reads were assigned to HMT-763 at these sites (PTO,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.24	0.20	0.16	0	0	0.14	0.14	0.21	0.04	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.58	0.46	0.35	0	0	0.36	0.46	0.55	0.11	0	0	0	0	0	0	0	0	0
Stdev	0.33	0.31	0.52	0	0	0.20	0.35	0.38	0.14	0	0	0	0	0	0	0	0	0
Prev(%)	88.64	88.05	49.38	0	0	81.25	51.40	75.18	36.50	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.28	0.28	0.03	0.06	0.03	0.02	0.11	0.09	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.82	0.67	0.10	0.11	0.04	0.05	0.21	0.09	0.05	0
Stdev	0.57	0.47	0.04	0.13	0.07	0.04	0.34	0.31	0.09	0
Prev(%)	83.78	88.23	69.77	80.00	75.00	68.00	78.79	70.97	52.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.04	0	0	0.01	0	0.01	0.14	0.28	0.10	0	0	0	0	0	0	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.13	0	0	0	0	0.02	0	1.30	0.20	0	0	0	0	0	0	0	0
Stdev	0.03	0.10	0.02	0	0.05	0	0.02	0.55	0.68	0.34	0	0	0	0	0	0	0.09	0
Prev(%)	41.67	52.27	4.17	5.88	6.92	0	12.50	6.25	28.00	29.81	0.45	0	0	0	0	0	0.51	0

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