HOMD ::Family:Campylobacteraceae

Family: Campylobacteraceae

Full Lineage: Bacteria; Pseudomonadota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae
Lower rank member(s): [Genus:Campylobacter]

LINKS: Ecology Home | Life Page: Campylobacteraceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Campylobacteraceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.77	1.21	1.61	1.37	0.34	0.45	2.05	3.89	2.37	2.10	0.22	0.06	0.57	0.06	0	0.14	0.03	0.02
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.41	0.14	0.51	0.04	0.03	0.45	0.48	1.73	0.59	0.49	0	0	0	0.06	0	0	0	0
90^thp	3.31	2.81	2.62	3.95	0.71	0.45	3.84	6.37	4.80	3.92	0.22	0.07	0.05	0.06	0.01	0.37	0.04	0.01
Stdev	1.09	1.12	1.44	2.08	0.75	0	1.41	2.27	1.71	1.62	0.87	0.20	2.31	0	0.01	0.35	0.18	0.20
Prev(%)	95.83	92.41	95.83	60.00	35.91	100.00	100.00	100.00	95.45	99.76	6.15	4.35	10.00	0	0	12.50	2.13	1.60

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.30	1.70	1.63	0.50	1.13	6.84	3.56	3.37	3.09	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.27	0.03	0	0.02	0.21	1.69	0.35	0.49	0.40	0
90^thp	4.83	4.47	3.36	1.38	2.27	12.97	8.06	7.60	6.29	0
Stdev	1.85	1.94	4.10	0.57	1.02	5.17	3.21	3.24	2.83	0.01
Prev(%)	100.00	94.81	81.82	90.91	100.00	98.70	98.70	100.00	100.00	5.20

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.04	0.88	0.56	0.22	0.37	2.34	0.93	0.89	0.77	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	2.51	2.49	1.57	0.65	0.96	6.31	2.42	2.24	1.68	0
Stdev	1.05	1.14	1.36	0.34	0.45	2.67	1.10	1.13	1.05	0
Prev(%)	87.16	81.76	61.49	68.24	77.03	87.16	84.46	82.43	78.38	2.80

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.49	1.91	1.73	0.42	1.15	5.73	2.54	3.50	3.15	0.20	0.07	0.05	0.10	0.09	0.23	0.08	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.42	0.08	0.01	0.01	0.11	1.13	0.40	0.69	0.67	0	0	0	0	0	0	0	0	0
90^thp	5.12	5.19	4.08	0.94	2.61	10.33	5.47	7.04	6.13	0.19	0.03	0	0.31	0.06	0.19	0.04	0.01	0
Stdev	2.10	2.20	3.48	0.51	1.31	4.58	2.29	3.16	2.85	1.02	0.43	0.45	0.46	0.66	1.02	0.33	0.18	0
Prev(%)	99.34	98.67	90.91	91.10	96.64	96.92	98.21	100.00	100.00	20.33	17.24	9.06	24.14	15.67	30.99	18.92	13.16	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.32	0.99	1.15	0.35	0.75	3.37	1.74	1.62	1.51	0.16	0.01	0.03	0	0.02	0.15	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.23	0.07	0	0	0.08	0.58	0.15	0.29	0.22	0	0	0	0	0	0	0	0	0
90^thp	2.87	2.41	3.09	0.91	1.78	7.44	3.94	3.50	3.13	0.20	0	0	0	0	0.15	0.02	0	0
Stdev	1.07	1.08	2.39	0.55	0.78	2.94	1.56	1.50	1.55	0.87	0.14	0.33	0	0.22	0.90	0.09	0	0
Prev(%)	98.27	96.83	74.81	82.63	93.61	98.21	95.02	99.76	99.27	14.18	2.55	2.47	0	3.33	25.29	15.30	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.62	1.33	0.28	0.28	0.52	0.21	0.72	0.66	0.28	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.14	0.11	0	0	0.04	0.04	0.14	0.07	0.01	0
90^thp	3.23	3.12	0.56	0.75	0.61	0.36	1.33	1.45	0.57	0
Stdev	2.15	1.86	0.58	0.45	1.03	0.30	0.86	0.57	0.33	0.02
Prev(%)	98.65	97.06	97.67	94.29	100.00	98.00	100.00	100.00	100.00	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.14	0.83	0.90	1.44	0.35	0.50	1.67	2.25	1.92	1.90	0.10	0.04	0.58	0	0	0.06	0.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.15	0.03	0.01	0	0	0.50	0.34	0.12	0.41	0.47	0	0	0	0	0	0	0	0
90^thp	2.34	2.10	1.98	4.39	0.78	0.50	3.74	4.16	3.97	3.55	0	0	0	0	0	0	0	0
Stdev	0.95	1.00	1.56	2.41	1.07	0	1.36	1.98	1.47	1.49	0.57	0.18	2.48	0	0.01	0.22	0.14	0.16
Prev(%)	100.00	93.94	91.67	70.59	74.47	100.00	100.00	93.75	96.00	99.77	7.21	4.17	9.38	0	9.09	7.14	3.03	5.27

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