HOMD ::Species:Capnocytophaga gingivalis

Species: Capnocytophaga gingivalis (HMT-0337) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga gingivalis

LINKS: Ecology Home | HMT-0337: [Body Sites Data] [Taxon Description] | Life Page: Capnocytophaga gingivalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Capnocytophaga gingivalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.51	1.39	0.26	0.05	0.16	0.02	0.13	0.57	0.45	0.21	0.02	0.01	0.01	0.02	0	0.14	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.26	0.26	0	0	0.01	0.02	0.07	0.03	0.01	0.01	0	0	0	0.02	0	0	0	0
90^thp	2.66	2.90	0.54	0.11	0.36	0.02	0.20	1.32	1.62	0.67	0.04	0.03	0.01	0.02	0.01	0.34	0.01	0
Stdev	1.68	1.13	0.51	0.08	0.43	0	0.06	0.91	0.81	0.49	0.05	0.02	0.01	0	0.01	0.40	0.06	0.03
Prev(%)	91.67	97.72	41.67	13.33	26.32	0	25.00	85.71	45.45	57.92	1.54	0	3.33	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to C. gingivalis and C. granulosa were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.43	1.52	0.05	0.22	0.04	0.20	0.19	0.29	0.13	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.19	0	0	0	0	0	0	0	0
90^thp	3.47	3.19	0.05	0.38	0.11	0.38	0.51	1.04	0.35	0
Stdev	1.53	1.68	0.32	0.56	0.10	0.35	0.43	0.55	0.29	0.01
Prev(%)	94.81	96.10	32.47	80.52	59.74	81.82	63.64	71.43	61.04	2.60

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.56	1.98	0.03	0.14	0.07	0.24	0.19	0.32	0.14	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.10	0.24	0	0	0	0	0	0	0	0
90^thp	3.46	4.11	0.07	0.34	0.17	0.59	0.52	0.99	0.38	0
Stdev	2.04	1.98	0.18	0.31	0.11	0.27	0.45	0.56	0.31	0
Prev(%)	96.62	96.62	22.30	66.89	60.13	85.81	62.16	72.30	58.11	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-325 and HMT-337 were assigned to each taxon in proportion to the abundance of HMT-325 and HMT-337 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.06	2.37	0.06	0.28	0.09	0.32	0.26	0.43	0.27	0	0.02	0.02	0.04	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.15	0.28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	5.11	5.40	0.18	0.62	0.23	0.80	0.64	1.07	0.74	0	0.01	0	0.01	0	0	0	0	0
Stdev	2.09	2.32	0.16	0.68	0.16	0.55	0.58	0.84	0.68	0	0.12	0.17	0.20	0	0	0	0	0
Prev(%)	96.69	100.00	47.55	80.82	67.11	79.23	63.39	77.33	63.87	0	11.49	7.93	11.49	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.96	2.35	0.11	0.34	0.13	0.34	0.39	0.46	0.22	0	0.15	0.15	0.30	0.17	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.16	0.32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	4.70	5.10	0.24	0.77	0.35	0.80	1.08	1.45	0.61	0	0.11	0.09	0.34	0.32	0	0	0	0
Stdev	2.28	2.13	0.39	1.00	0.23	0.66	0.82	0.76	0.51	0	0.72	1.11	1.39	0.76	0	0	0	0
Prev(%)	98.77	99.27	38.02	74.94	61.38	86.61	65.73	75.18	69.34	0	21.02	18.52	24.83	20.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 325 and 337 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.97	1.35	0.08	0.06	0.13	0.10	0.07	0.04	0.10	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.08	0	0	0	0	0	0	0	0
90^thp	2.57	4.26	0.37	0.22	0.33	0.26	0.26	0.15	0.50	0
Stdev	2.64	1.88	0.13	0.09	0.29	0.17	0.13	0.08	0.19	0
Prev(%)	95.95	100.00	79.07	80.00	78.57	82.00	75.76	58.06	65.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.97	1.78	0.29	0.06	0.24	0.02	0.13	0.88	0.62	0.31	0.01	0	0	0	0	0.10	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.26	0.31	0	0	0	0.02	0.07	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.48	3.83	0.52	0.17	0.57	0.02	0.20	3.50	2.14	0.87	0	0	0	0	0	0	0	0
Stdev	2.51	1.50	0.64	0.12	0.88	0	0.07	1.53	1.13	0.75	0.10	0	0.01	0	0	0.37	0.05	0.03
Prev(%)	100.00	98.48	58.33	35.29	62.50	100.00	100.00	62.50	68.00	72.30	1.35	0	6.25	0	0	7.14	2.02	0.55

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