HOMD ::Family:Carnobacteriaceae

Family: Carnobacteriaceae

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae
Lower rank member(s): [Genus:Alloiococcus] [Genus:Dolosigranulum] [Genus:Granulicatella]

LINKS: Ecology Home | Life Page: Carnobacteriaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Carnobacteriaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.30	0.33	0.37	1.39	0.84	1.52	0.60	0.54	0.67	0.90	3.93	0.06	0.03	0.75	0.02	0.06	0.03	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.05	0.07	0.03	0.32	0.16	1.52	0.37	0.16	0.20	0.26	0.01	0.01	0	0.75	0	0	0	0
90^thp	0.66	0.69	0.90	2.27	1.89	1.52	0.89	1.08	1.30	1.68	8.88	0.27	0.05	0.75	0.05	0.22	0.06	0.01
Stdev	0.30	0.26	0.67	0.79	0.87	0	0.24	0.45	0.58	0.84	9.60	0.10	0.06	0	0.03	0.10	0.05	0.13
Prev(%)	75.00	93.16	50.00	86.67	73.68	100.00	75.00	100.00	81.82	99.76	36.92	13.04	3.33	0	0	12.50	0	0.80

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.65	0.62	3.37	1.72	2.69	1.54	1.77	1.58	2.81	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.10	0.05	0.02	0.17	0.84	0.27	0.41	0.28	0.77	0
90^thp	1.30	1.52	9.98	4.20	5.51	3.25	3.64	2.99	5.36	0
Stdev	0.81	0.61	4.20	1.84	1.78	1.25	1.34	1.21	1.89	0.01
Prev(%)	92.21	98.70	94.81	100.00	100.00	93.51	98.70	100.00	100.00	6.49

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.53	0.68	2.43	1.63	2.74	1.61	1.74	1.56	3.14	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.12	0.06	0.28	0.94	0.42	0.37	0.28	0.78	0
90^thp	1.09	1.25	6.56	3.77	4.77	3.33	3.26	3.16	6.52	0
Stdev	0.67	0.77	2.90	1.86	1.68	1.26	1.21	1.23	2.36	0.02
Prev(%)	92.57	98.65	95.27	99.32	99.32	99.32	100.00	98.65	100.00	7.69

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.52	0.52	2.37	1.83	2.58	1.60	1.65	1.63	2.70	4.32	0.10	0.07	0.42	0.50	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0.06	0.06	0.23	0.83	0.17	0.23	0.19	0.48	0	0	0	0	0	0	0	0	0
90^thp	1.10	1.26	5.80	3.90	4.72	3.53	3.39	3.54	5.42	16.13	0.21	0.12	0.99	1.28	0	0	0	0
Stdev	0.77	0.49	2.90	1.62	1.63	1.70	1.80	1.61	2.26	8.67	0.38	0.35	0.87	0.99	0	0	0	0
Prev(%)	96.69	98.01	97.90	97.26	100.00	91.54	97.92	99.33	100.00	73.33	47.13	40.23	59.20	57.14	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.53	0.64	3.96	2.88	4.72	1.72	2.18	1.90	3.49	3.16	0.34	0.34	0.50	0.61	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0.09	0.19	0.46	1.36	0.37	0.20	0.21	0.58	0	0	0	0	0	0	0	0	0
90^thp	1.19	1.42	8.74	6.30	8.33	3.52	4.65	3.91	7.50	10.73	0.56	0.57	1.15	1.94	0	0	0	0
Stdev	0.66	0.68	5.32	2.75	3.88	1.56	2.25	1.99	3.46	6.60	1.82	1.40	1.26	1.09	0	0	0	0
Prev(%)	95.80	98.54	94.32	97.52	99.49	99.41	98.44	99.76	99.51	74.71	44.59	49.07	62.07	63.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.83	1.08	2.55	1.06	1.74	2.55	1.41	2.19	1.92	0.34
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.14	0.15	0.23	0.71	0.61	0.25	0.14	0.25	0
90^thp	2.20	2.72	6.18	1.95	2.77	5.12	3.29	3.37	4.16	0.80
Stdev	0.92	1.46	3.74	0.73	0.84	2.02	1.40	3.71	1.60	0.73
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	65.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.34	0.38	0.38	2.15	1.53	2.55	1.05	0.74	0.92	1.96	6.02	0.03	0.01	0.41	0	0.02	0.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.05	0	0.19	0.08	2.55	0.59	0.02	0.14	0.47	0	0	0	0.41	0	0	0	0
90^thp	0.99	0.81	0.95	3.65	4.00	2.55	1.68	1.62	2.23	3.88	22.94	0.04	0.01	0.41	0	0.02	0	0
Stdev	0.42	0.38	0.75	1.50	1.81	0	0.52	0.85	0.81	2.02	12.13	0.08	0.03	0	0.01	0.06	0.10	0.26
Prev(%)	87.50	97.47	79.17	94.12	93.88	100.00	100.00	93.75	92.00	99.53	43.69	16.67	12.50	100.00	9.09	14.29	2.52	2.73

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