HOMD ::Order:Caryophanales

Order: Caryophanales

Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales
Lower rank member(s): [Family:Bacillaceae] [Family:Caryophanaceae] [Family:Gemellaceae] [Family:Listeriaceae] [Family:Paenibacillaceae] [Family:Staphylococcaceae]
Genera:

LINKS: Ecology Home | Life Page: Caryophanales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Order: Caryophanales

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.35	0.38	0.24	3.34	5.01	6.34	0.95	0.78	1.53	0.97	6.84	12.37	9.20	4.84	0.04	0.07	0.04	0.02
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.09	0.04	0.01	1.28	1.13	6.34	0.55	0.24	0.30	0.19	0.64	1.61	1.06	4.84	0.01	0	0	0
90^thp	0.85	0.81	0.65	6.06	10.16	6.34	1.42	1.32	2.68	2.06	13.67	30.02	20.83	4.84	0.07	0.23	0.08	0.03
Stdev	0.32	0.73	0.39	2.29	4.03	0	0.43	0.52	1.79	0.91	12.40	13.22	9.54	0	0.04	0.11	0.09	0.07
Prev(%)	75.00	80.76	50.00	100.00	96.28	100.00	62.50	100.00	86.36	98.58	69.23	100.00	100.00	0	0	12.50	3.19	0.80

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.83	0.62	5.86	8.12	4.52	1.03	2.48	2.74	1.23	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.03	0.61	1.60	1.10	0.07	0.30	0.21	0.15	0
90^thp	1.41	1.21	11.61	16.41	10.04	1.99	6.70	6.14	3.65	0
Stdev	1.76	1.05	4.96	6.37	4.49	0.95	2.80	3.24	1.27	0.01
Prev(%)	92.21	94.81	100.00	100.00	100.00	92.21	98.70	100.00	96.10	9.09

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.46	0.45	2.64	5.28	2.48	0.61	1.80	1.54	0.71	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.02	0.28	0.70	0.51	0.13	0.16	0.16	0.06	0
90^thp	0.82	0.77	5.74	12.15	4.87	1.20	4.63	3.21	1.51	0
Stdev	0.80	0.92	2.67	5.35	2.74	0.48	2.03	2.02	0.73	0
Prev(%)	90.54	90.54	99.32	99.32	99.32	96.62	97.30	97.97	97.30	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.75	0.52	5.40	8.27	4.70	1.24	1.91	1.84	0.85	16.21	20.84	20.55	12.83	12.85	0.09	0.15	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.06	0.02	0.74	1.66	1.01	0.10	0.13	0.18	0.11	2.70	1.58	1.56	0.61	0.60	0	0	0	0
90^thp	1.63	1.02	10.39	15.90	10.04	2.16	4.27	3.63	2.19	35.07	52.76	53.97	39.84	44.72	0.27	0.12	0	0
Stdev	1.46	0.84	4.44	6.98	4.58	2.74	2.72	2.30	0.87	14.77	20.71	21.25	19.27	21.19	0.17	0.64	0	0
Prev(%)	95.36	94.70	100.00	97.94	97.99	92.31	97.32	99.33	99.36	99.33	99.14	99.72	97.13	97.23	66.20	59.46	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.73	0.55	9.87	15.93	7.90	1.17	3.11	2.85	1.21	3.46	4.28	3.13	1.43	1.79	0	0.03	0.03	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.08	0.05	1.26	2.75	1.20	0.19	0.23	0.27	0.14	0.18	0.08	0.05	0.02	0	0	0	0	0
90^thp	1.23	1.13	23.06	38.18	18.18	2.43	7.77	6.07	2.90	6.74	11.88	7.26	2.75	3.82	0	0.03	0.02	0
Stdev	2.87	0.86	11.25	14.55	8.27	1.13	4.94	4.55	1.37	7.05	8.57	7.03	3.51	4.07	0	0.21	0.31	0.11
Prev(%)	98.03	96.58	99.26	100.00	99.74	97.62	97.82	99.27	99.03	98.08	99.05	95.68	90.34	88.67	0	19.67	18.85	7.30

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.69	0.63	2.85	3.88	2.03	1.77	1.67	2.15	1.13	15.58
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.07	0.21	0.33	0.34	0.16	0.20	0.17	0.18	2.05
90^thp	1.66	1.47	9.23	9.42	4.54	4.17	3.90	6.91	2.52	31.74
Stdev	1.01	0.94	3.51	6.36	1.88	1.89	2.23	2.96	1.01	23.19
Prev(%)	98.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.32	0.44	0.22	2.54	6.72	5.30	0.77	0.68	1.14	1.00	8.22	10.55	7.90	4.37	0.01	0.01	0.02	0.13
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.01	0	0.43	0.94	5.30	0.38	0	0.12	0.14	0	1.21	0.55	4.37	0	0	0	0
90^thp	0.78	0.75	0.49	5.50	15.79	5.30	1.32	1.47	2.45	2.25	21.63	23.10	16.86	4.37	0.02	0.01	0	0.30
Stdev	0.33	2.08	0.43	2.22	7.21	0	0.49	0.71	1.30	1.05	12.64	10.99	7.54	0	0.03	0.04	0.10	0.46
Prev(%)	95.83	92.17	58.33	100.00	99.20	100.00	100.00	81.25	92.00	99.06	86.94	100.00	100.00	100.00	18.18	14.29	9.09	19.82

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