HOMD ::Genus:Escherichia

Genus: Escherichia

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Lower rank member(s): [Species:Escherichia coli]

LINKS: Ecology Home | Life Page: Escherichia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Escherichia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.01	0	0.03	0.01	0	0.01	0.03	0.07	0	0.46	0.01	0.01	10.48	0.04	0.04	0.09	0.36
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	10.48	0.01	0	0	0
90^thp	0.15	0	0	0.08	0.02	0	0.04	0.08	0.19	0	0.15	0.02	0.01	10.48	0.08	0.07	0.07	0.23
Stdev	0.28	0.07	0	0.06	0.03	0	0.02	0.06	0.14	0.04	2.70	0.01	0.02	0	0.04	0.03	0.49	4.97
Prev(%)	25.00	2.78	0	13.33	1.86	0	12.50	28.57	18.18	3.78	9.23	0	0	100.00	0	12.50	5.32	22.40

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0.03	0	0	0	0.03	0	0	0.03	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0.02	0	0	0	0.03	0	0	0.04	0.07	0	0	0	0
Stdev	0	0	0	0	0	0.27	0	0	0	0.14	0	0	0.11	0.07	0	0	0	0
Prev(%)	0	0	0	0	0	13.08	0	0	0	16.00	0	0	18.97	23.96	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0.04	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0.19	0	0
Prev(%)	6.76	2.94	4.65	8.57	7.14	0	3.03	6.45	2.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.08	0	0	0.02	0	0	0.01	1.32	0.04	0.04	0.55	0	0	12.49	0.01	0.54	0.16	0.20
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	12.49	0	0	0	0
90^thp	0.12	0	0	0.09	0	0	0.01	2.63	0.09	0	0	0	0	12.49	0.02	0.41	0	0.08
Stdev	0.26	0.01	0	0.04	0.02	0	0.02	3.82	0.12	0.74	5.95	0	0	0	0.01	1.80	1.01	4.07
Prev(%)	29.17	2.27	0	23.53	2.93	0	12.50	37.50	28.00	2.58	7.21	0	0	100.00	18.18	42.86	10.10	26.18

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