HOMD ::Family:Flavobacteriaceae

Family: Flavobacteriaceae

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae
Lower rank member(s): [Genus:Capnocytophaga]

LINKS: Ecology Home | Life Page: Flavobacteriaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Flavobacteriaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.07	7.46	2.05	0.26	0.82	0.09	1.23	2.25	2.23	0.65	0.10	0.06	0.04	0.15	0.01	1.11	0.04	0.02
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.78	1.94	0.10	0.02	0.08	0.09	0.57	0.23	0.05	0.02	0.01	0	0	0.15	0	0	0	0
90^thp	11.53	13.99	4.30	0.66	1.76	0.09	1.79	5.36	5.49	1.97	0.19	0.23	0.04	0.15	0.02	2.68	0.04	0.02
Stdev	3.71	4.89	2.02	0.26	1.59	0	0.58	3.21	5.67	1.37	0.21	0.11	0.13	0	0.01	3.10	0.24	0.12
Prev(%)	100.00	99.49	83.33	60.00	44.27	100.00	62.50	85.71	63.64	70.21	1.54	4.35	6.67	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	9.25	9.83	0.53	1.39	0.30	1.47	1.15	1.72	0.57	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.12	1.35	0	0.02	0	0.14	0	0.02	0	0
90^thp	18.48	17.70	1.48	2.58	0.81	3.02	3.27	4.60	1.38	0
Stdev	7.25	6.69	1.29	2.97	0.49	1.58	2.51	3.02	1.23	0.01
Prev(%)	98.70	97.40	67.53	90.91	88.31	92.21	87.01	90.91	81.82	6.49

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	6.82	8.70	0.24	0.73	0.31	1.50	0.90	1.41	0.53	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.15	2.28	0	0.06	0.03	0.35	0	0.01	0	0
90^thp	13.30	15.64	0.48	1.78	0.70	3.26	2.21	4.46	1.33	0
Stdev	5.01	4.89	0.80	1.24	0.52	1.20	2.17	2.52	1.15	0.01
Prev(%)	99.32	99.32	52.70	95.27	93.24	99.32	85.81	90.54	83.11	2.10

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.00	9.20	0.81	1.00	0.28	1.43	0.99	1.58	0.61	0.01	0.09	0.06	0.09	0.15	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.46	2.07	0	0.07	0	0.06	0	0.02	0	0	0	0	0	0	0	0	0	0
90^thp	15.03	15.86	2.43	2.21	0.72	3.39	2.96	5.19	2.39	0.03	0.06	0.03	0.17	0.17	0	0	0	0
Stdev	5.36	6.10	1.72	1.75	0.37	1.46	2.10	2.55	1.19	0.05	0.68	0.48	0.34	0.91	0	0	0	0
Prev(%)	99.34	100.00	83.22	95.20	85.91	92.31	81.25	95.33	82.58	17.67	26.44	17.28	28.16	18.43	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	7.62	9.44	1.10	1.60	0.50	1.74	1.39	1.82	0.68	0	0.28	0.18	0.72	0.47	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.24	2.42	0	0.11	0	0.28	0	0.02	0	0	0	0	0	0	0	0	0	0
90^thp	14.49	17.07	2.96	3.45	1.21	3.84	3.75	5.00	2.05	0	0.22	0.10	1.32	0.76	0	0	0	0
Stdev	5.73	5.78	2.42	2.76	0.79	2.10	2.84	3.17	1.27	0	1.26	1.20	2.66	1.86	0	0	0	0
Prev(%)	99.75	100.00	77.78	94.79	83.89	97.92	86.60	92.21	87.59	0	29.30	20.99	42.76	36.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.42	8.11	0.48	0.38	0.90	0.40	0.49	0.22	0.46	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.12	0.68	0.01	0.01	0.01	0.01	0	0	0	0
90^thp	11.91	16.45	1.09	0.84	1.41	0.97	1.56	0.71	0.71	0
Stdev	5.76	6.21	0.97	0.55	2.78	0.63	1.03	0.40	1.33	0.01
Prev(%)	100.00	100.00	100.00	94.29	96.43	96.00	90.91	93.55	92.50	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.00	7.43	2.09	0.28	0.97	0.10	0.93	3.59	2.55	0.74	0.10	0.01	0.02	0.71	0	0.61	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.68	1.78	0.08	0	0	0.10	0.34	0	0	0	0	0	0	0.71	0	0	0	0
90^thp	12.47	13.57	3.97	0.86	2.21	0.10	1.77	9.84	5.90	2.44	0	0	0	0.71	0	0	0	0
Stdev	3.89	4.92	2.21	0.38	2.17	0	0.61	6.69	6.72	1.58	1.40	0.05	0.07	0	0	2.27	0.27	0.08
Prev(%)	100.00	99.75	95.83	70.59	81.38	100.00	100.00	75.00	80.00	79.58	5.41	4.17	9.38	100.00	0	7.14	4.54	0.91

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