HOMD ::Class:Flavobacteriia

Class: Flavobacteriia

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Full Lineage: Bacteria; Bacteroidota; Flavobacteriia
Lower rank member(s): [Order:Flavobacteriales]
Genera:

LINKS: Ecology Home | Life Page: Flavobacteriia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Class: Flavobacteriia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.09	7.47	2.05	0.27	0.83	0.10	1.24	2.25	2.23	0.65	0.14	0.07	0.04	0.56	0.01	1.11	0.05	0.02
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.79	1.95	0.10	0.02	0.08	0.10	0.57	0.23	0.06	0.02	0.01	0	0	0.56	0	0	0	0.01
90^thp	11.54	14.00	4.30	0.67	1.77	0.10	1.80	5.36	5.49	1.98	0.28	0.27	0.05	0.56	0.03	2.69	0.05	0.03
Stdev	3.70	4.89	2.02	0.27	1.59	0	0.58	3.21	5.67	1.37	0.29	0.12	0.13	0	0.01	3.10	0.26	0.12
Prev(%)	100.00	99.49	83.33	60.00	45.20	100.00	62.50	85.71	63.64	70.21	1.54	4.35	6.67	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	10.47	11.54	1.53	2.10	0.57	2.04	1.61	2.22	0.85	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.50	3.00	0.06	0.18	0.05	0.26	0.05	0.06	0.03	0
90^thp	19.95	20.91	4.34	4.08	1.22	4.99	4.33	5.81	2.14	0
Stdev	7.71	7.19	1.85	3.13	0.66	1.99	2.75	3.26	1.38	0.01
Prev(%)	100.00	100.00	94.81	98.70	96.10	94.81	94.81	92.21	93.51	7.79

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.26	9.32	0.61	1.35	0.47	1.83	1.14	1.62	0.66	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.15	3.00	0	0.18	0.06	0.46	0.03	0.04	0	0
90^thp	14.01	16.10	1.36	2.62	0.93	3.70	2.63	4.75	1.55	0
Stdev	5.15	4.93	1.25	2.82	0.58	1.33	2.27	2.64	1.22	0.01
Prev(%)	99.32	100.00	84.46	100.00	95.95	100.00	91.22	93.92	88.51	2.10

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.32	10.79	2.03	1.79	0.52	1.99	1.28	2.00	0.82	0.05	0.14	0.10	0.27	0.33	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.18	3.29	0.23	0.20	0.04	0.34	0.02	0.09	0.01	0	0	0	0	0	0	0	0	0
90^thp	16.11	17.47	4.83	3.64	1.20	4.56	3.44	5.61	2.86	0.14	0.14	0.13	0.70	0.71	0	0	0	0
Stdev	6.07	6.73	2.29	2.01	0.51	1.78	2.22	2.85	1.32	0.11	0.81	0.57	0.94	1.21	0	0	0	0
Prev(%)	99.34	100.00	97.90	96.58	92.62	93.85	93.75	97.33	93.55	39.33	39.94	34.56	39.66	40.55	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.76	11.03	3.21	3.39	0.93	2.32	1.65	2.26	0.94	0	0.35	0.26	0.84	0.47	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.57	3.49	0.34	0.55	0.10	0.55	0.03	0.09	0.04	0	0	0	0	0	0	0	0	0
90^thp	16.29	19.42	6.55	6.96	2.05	4.76	3.99	5.71	2.60	0	0.27	0.22	2.09	0.76	0	0	0	0
Stdev	6.27	6.17	4.91	4.61	0.97	2.27	2.99	3.35	1.38	0	1.44	1.45	2.78	1.86	0	0	0	0
Prev(%)	99.75	100.00	98.03	99.50	93.86	99.11	91.59	97.81	94.65	0	33.76	25.93	48.97	36.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.60	8.39	0.53	0.44	0.95	0.44	0.53	0.25	0.49	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.13	0.77	0.03	0.02	0.02	0.03	0.01	0.01	0.01	0
90^thp	12.04	17.84	1.19	0.89	1.44	1.01	1.75	0.82	0.79	0
Stdev	5.95	6.42	1.01	0.55	2.84	0.64	1.07	0.42	1.35	0.01
Prev(%)	100.00	100.00	100.00	97.14	100.00	98.00	100.00	100.00	100.00	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.01	7.43	2.09	0.28	0.98	0.10	0.93	3.59	2.55	0.74	0.12	0.01	0.02	1.19	0	0.61	0.04	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.73	1.78	0.08	0	0	0.10	0.34	0	0	0	0	0	0	1.19	0	0	0	0
90^thp	12.47	13.57	3.97	0.86	2.21	0.10	1.77	9.84	5.90	2.44	0	0	0	1.19	0	0	0	0
Stdev	3.88	4.92	2.21	0.38	2.17	0	0.61	6.69	6.72	1.58	1.41	0.05	0.07	0	0	2.27	0.27	0.08
Prev(%)	100.00	99.75	95.83	70.59	82.71	100.00	100.00	75.00	80.00	79.58	8.11	4.17	9.38	100.00	0	7.14	5.56	1.27

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