HOMD ::Class:Fusobacteriia

Class: Fusobacteriia

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Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia
Lower rank member(s): [Order:Fusobacteriales]
Genera:

LINKS: Ecology Home | Life Page: Fusobacteriia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Class: Fusobacteriia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.34	4.31	5.14	2.24	1.70	1.32	2.52	10.39	8.76	5.60	3.13	0.10	0.03	0.28	0.13	1.11	1.62	0.03
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.24	0.53	2.23	0.19	0.28	1.32	1.66	4.43	3.86	0.92	0.02	0.01	0	0.28	0	0.01	0.01	0
90^thp	12.67	9.68	8.32	3.92	3.53	1.32	3.25	17.57	15.90	11.57	12.03	0.28	0.05	0.28	0.35	2.68	6.34	0.03
Stdev	5.46	3.92	3.79	3.40	2.22	0	0.77	7.43	5.31	4.91	6.05	0.22	0.07	0	0.24	3.00	3.39	0.20
Prev(%)	100.00	97.47	100.00	80.00	59.13	100.00	87.50	100.00	95.45	98.82	3.08	0	0	0	25.00	12.50	12.77	1.07

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	9.98	6.60	2.08	1.83	2.16	3.09	6.55	8.76	5.36	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.04	0.28	0.01	0.20	0.34	0.71	0.69	1.60	0.43	0
90^thp	19.29	14.98	6.62	3.89	4.70	6.11	14.38	18.95	12.61	0
Stdev	9.56	6.34	4.33	1.97	1.74	2.04	6.46	7.62	4.57	0.01
Prev(%)	98.70	100.00	90.91	98.70	98.70	98.70	100.00	100.00	100.00	9.09

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	18.24	13.43	2.49	4.02	4.96	8.28	11.39	15.43	11.81	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	5.24	1.87	0.06	0.63	0.99	2.19	2.39	4.64	1.89	0
90^thp	30.31	24.93	6.44	7.90	10.12	14.90	23.45	27.98	24.71	0
Stdev	9.40	8.96	3.65	3.55	4.18	4.82	8.27	8.64	8.85	0.01
Prev(%)	100.00	100.00	97.30	100.00	100.00	100.00	100.00	100.00	100.00	6.99

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	12.12	8.18	3.12	3.55	4.39	5.05	10.42	13.72	9.22	0.18	0.29	0.12	0.70	0.69	0.50	0.40	0.40	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.00	0.82	0.07	0.47	0.60	1.14	2.14	2.84	0.86	0	0	0	0	0	0	0	0	0
90^thp	23.78	19.12	8.51	7.57	9.75	11.45	21.74	24.56	19.74	0.38	0.29	0.15	1.49	1.64	0.07	0.09	0.03	0
Stdev	8.43	7.23	4.67	3.58	4.08	3.90	8.45	8.63	7.43	0.71	1.52	0.60	2.40	1.75	2.45	2.22	2.77	0.04
Prev(%)	99.34	99.34	97.20	99.31	99.33	97.69	99.41	100.00	100.00	59.00	49.71	41.36	59.77	56.68	23.94	16.22	11.84	1.31

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	17.03	11.50	4.72	6.61	8.13	8.57	15.64	19.48	13.40	0.24	1.03	0.86	2.55	2.45	0.81	0.67	0.80	0.04
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	4.26	1.58	0.24	1.28	2.04	2.63	3.94	7.64	2.40	0	0	0	0	0	0	0	0	0
90^thp	29.11	23.82	12.10	13.65	16.29	17.06	30.13	33.35	25.86	0.60	1.39	1.74	5.85	5.67	0.14	0	0	0.02
Stdev	9.98	8.95	5.89	5.63	5.99	5.76	10.64	9.84	9.38	0.67	3.55	2.91	5.56	6.16	4.36	4.00	4.75	0.47
Prev(%)	100.00	100.00	97.28	99.75	100.00	100.00	99.38	100.00	99.76	65.90	63.06	58.64	78.62	76.00	33.91	7.10	6.81	17.76

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	19.10	18.61	3.52	4.31	4.39	4.91	8.99	9.54	8.04	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.30	2.61	0.08	0.14	0.58	0.25	1.39	2.91	0.12	0
90^thp	39.55	34.38	10.64	10.86	8.80	13.53	17.44	17.26	22.10	0.09
Stdev	14.49	12.68	4.65	4.67	5.76	5.51	8.98	9.48	9.81	0.04
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	30.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.50	3.59	4.40	2.02	1.99	1.99	2.56	10.39	9.16	6.21	0.13	0.03	0.01	0	0.04	0.60	0.40	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	2.18	0.43	0.93	0.02	0.10	1.99	1.57	2.52	2.83	0.96	0	0	0	0	0	0	0	0
90^thp	13.52	8.39	8.34	4.79	4.85	1.99	3.35	20.39	18.43	13.58	0	0	0	0	0.07	0.02	0.03	0
Stdev	6.44	3.37	3.63	3.06	2.67	0	0.87	7.46	6.16	5.28	0.91	0.10	0.02	0	0.12	2.25	2.27	0.13
Prev(%)	100.00	99.75	100.00	88.23	96.28	100.00	100.00	93.75	100.00	99.06	4.96	8.33	9.38	0	18.18	14.29	11.62	5.09

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