Species: Fusobacterium polymorphum (HMT-0202) Primary Body Site: Oral
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| HMT-0202: [Body Sites Data]
[Taxon Description]
| Life Page: Fusobacterium polymorphum
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.72 | 0.83 | 0.42 | 0.33 | 0.20 | 0.02 | 0.13 | 0.13 | 0.35 | 0.12 | 0.01 | 0.01 | 0 | 0.03 | 0 | 0.13 | 0 | 0 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.20 | 0.07 | 0.04 | 0.02 | 0.02 | 0.02 | 0.04 | 0.05 | 0.03 | 0.01 | 0 | 0 | 0 | 0.03 | 0 | 0 | 0 | 0 |
| 90thp | 1.29 | 2.04 | 1.01 | 0.74 | 0.41 | 0.02 | 0.25 | 0.22 | 0.92 | 0.16 | 0.02 | 0.03 | 0.01 | 0.03 | 0.01 | 0.32 | 0 | 0 |
| Stdev | 0.47 | 0.90 | 0.44 | 0.39 | 0.38 | 0 | 0.08 | 0.10 | 0.58 | 0.80 | 0.03 | 0.02 | 0.01 | 0 | 0 | 0.36 | 0.01 | 0.01 |
| Prev(%) | 87.50 | 92.41 | 66.67 | 73.33 | 34.37 | 0 | 37.50 | 28.57 | 40.91 | 54.85 | 1.54 | 0 | 0 | 0 | 0 | 12.50 | 0 | 0 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to F. nucleatum subsp. polymorphum and F. nucleatum subsp. vincentii were assigned half to each taxon
reads equally close to F. nucleatum subsp. polymorphum, F. nucleatum subsp. vincentii, and F. polymorphum were assigned one third to each taxon
reads equally close to F. nucleatum subsp. polymorphum and F. nucleatum subsp. vincentii were assigned half to each taxon
reads equally close to F. nucleatum subsp. polymorphum, F. nucleatum subsp. vincentii, and F. polymorphum were assigned one third to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.66 | 0.61 | 0.20 | 0.14 | 0.02 | 0.10 | 0.13 | 0.19 | 0.01 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.06 | 0.02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.50 | 1.75 | 0.72 | 0.28 | 0.07 | 0.27 | 0.08 | 0.22 | 0.04 | 0 |
| Stdev | 0.57 | 0.83 | 0.41 | 0.30 | 0.03 | 0.13 | 0.81 | 0.97 | 0.03 | 0 |
| Prev(%) | 97.40 | 96.10 | 75.33 | 83.12 | 62.34 | 76.62 | 50.65 | 74.03 | 45.45 | 0 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to F. nucleatum subsp. nucleatum,F. nucleatum subsp. polymorphum, and F. sp. HMT 203 were assigned one-third to each taxon.
Reads equally close to F. nucleatum subsp. nucleatum,F. nucleatum subsp. polymorphum, and F. sp. HMT 203 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 1.48 | 1.52 | 0.34 | 0.20 | 0.04 | 0.23 | 0.07 | 0.12 | 0.05 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.11 | 0.12 | 0 | 0.01 | 0 | 0.02 | 0 | 0 | 0 | 0 |
| 90thp | 3.63 | 3.55 | 1.13 | 0.45 | 0.11 | 0.52 | 0.13 | 0.23 | 0.09 | 0 |
| Stdev | 1.35 | 1.33 | 0.61 | 0.35 | 0.05 | 0.23 | 0.15 | 0.29 | 0.11 | 0 |
| Prev(%) | 98.65 | 99.32 | 87.84 | 97.30 | 79.05 | 93.24 | 84.46 | 90.54 | 85.14 | 1.40 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-202 and HMT-953 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-953 individually at these sites (AKE,PTO,SAL,SUBP,SUPP).
Reads equidistant to HMT-201 and HMT-202 were assigned to each taxon in proportion to the abundance of HMT-201 and HMT-202 individually at this body site (BMU).
Some of the reads equidistant from these taxa (201-202-953) are included in HMT-202 because they are too close to differentiate at this site (SUPP).
Reads equidistant to HMT-202 and HMT-953 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-953 individually at these sites (AKE,PTO,SAL,SUBP,SUPP).
Reads equidistant to HMT-201 and HMT-202 were assigned to each taxon in proportion to the abundance of HMT-201 and HMT-202 individually at this body site (BMU).
Some of the reads equidistant from these taxa (201-202-953) are included in HMT-202 because they are too close to differentiate at this site (SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 2.13 | 2.29 | 1.22 | 0.78 | 0.21 | 0.44 | 0.18 | 0.36 | 0.23 | 0.05 | 0.04 | 0.03 | 0.10 | 0.12 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.28 | 0.12 | 0.02 | 0.01 | 0 | 0 | 0 | 0.02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 4.57 | 6.36 | 3.63 | 1.94 | 0.41 | 1.05 | 0.37 | 0.69 | 0.21 | 0.07 | 0.04 | 0.01 | 0.13 | 0.26 | 0 | 0 | 0 | 0 |
| Stdev | 1.91 | 2.62 | 1.97 | 1.61 | 0.79 | 0.58 | 0.55 | 0.73 | 1.84 | 0.36 | 0.23 | 0.25 | 0.56 | 0.50 | 0 | 0 | 0 | 0 |
| Prev(%) | 97.35 | 98.67 | 93.01 | 90.41 | 85.23 | 84.61 | 74.70 | 94.00 | 83.87 | 29.00 | 18.10 | 14.16 | 21.26 | 21.66 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-202 and HMT-203 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-203 individually at these sites (AKE,SUPP,THR).
Neither HMT-202 nor HMT-203 were present singularly so these reads were split evenly at this site (LAF).
Because HMT-203 is not present individually, all equidistant reads were assigned to HMT-202 at these sites (BMU,SAL,TDO).
Because HMT-953 is not present individually, all equidistant reads were assigned to HMT-202 at these sites (HPA,PTO,RRC,SUBP).
Some of the reads equidistant from these taxa (200-202-203) are included in HMT-202 because they are too close to differentiate at these sites (BMU,HPA,SUPP,TDO).
Some of the reads equidistant from these taxa (202-203-370-953) are included in HMT-202 because they are too close to differentiate at these sites (PTO,SUBP,SUPP).
Some of the reads equidistant from these taxa (202-370-953) are included in HMT-202 because they are too close to differentiate at these sites (PTO,SUBP,SUPP).
Some of the reads equidistant from these taxa (202-203-698) are included in HMT-202 because they are too close to differentiate at these sites (SUBP,SUPP).
Reads equidistant to HMT-202 and HMT-203 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-203 individually at these sites (AKE,SUPP,THR).
Neither HMT-202 nor HMT-203 were present singularly so these reads were split evenly at this site (LAF).
Because HMT-203 is not present individually, all equidistant reads were assigned to HMT-202 at these sites (BMU,SAL,TDO).
Because HMT-953 is not present individually, all equidistant reads were assigned to HMT-202 at these sites (HPA,PTO,RRC,SUBP).
Some of the reads equidistant from these taxa (200-202-203) are included in HMT-202 because they are too close to differentiate at these sites (BMU,HPA,SUPP,TDO).
Some of the reads equidistant from these taxa (202-203-370-953) are included in HMT-202 because they are too close to differentiate at these sites (PTO,SUBP,SUPP).
Some of the reads equidistant from these taxa (202-370-953) are included in HMT-202 because they are too close to differentiate at these sites (PTO,SUBP,SUPP).
Some of the reads equidistant from these taxa (202-203-698) are included in HMT-202 because they are too close to differentiate at these sites (SUBP,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 2.36 | 3.96 | 1.37 | 1.33 | 0.32 | 0.77 | 0.23 | 0.43 | 0.26 | 0 | 0 | 0.21 | 0.10 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.34 | 0.33 | 0.03 | 0.05 | 0 | 0.04 | 0 | 0.04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 5.05 | 9.59 | 3.71 | 3.29 | 0.66 | 1.80 | 0.50 | 0.84 | 0.46 | 0 | 0 | 0.25 | 0.31 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 2.03 | 3.72 | 2.12 | 2.05 | 0.85 | 0.88 | 0.53 | 1.04 | 1.43 | 0 | 0 | 0.88 | 0.25 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 98.52 | 99.02 | 91.85 | 93.30 | 75.96 | 94.34 | 78.82 | 96.11 | 89.54 | 0 | 0 | 33.33 | 36.55 | 0 | 0 | 0 | 0 | 0 |
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 202 and 953 were assigned half to each taxon.
Reads equally close to HMT 200 and 202 were assigned half to each taxon.
Reads equally close to HMT 201 and 202 were assigned half to each taxon.
Reads equally close to HMT 202 and 953 were assigned half to each taxon.
Reads equally close to HMT 200 and 202 were assigned half to each taxon.
Reads equally close to HMT 201 and 202 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 1.82 | 4.93 | 0.38 | 0.72 | 0.58 | 0.18 | 0.29 | 0.35 | 0.08 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.01 | 0.19 | 0.01 | 0 | 0.01 | 0.01 | 0.01 | 0 | 0 | 0 |
| 90thp | 6.25 | 16.95 | 1.14 | 1.85 | 2.63 | 0.44 | 0.48 | 0.48 | 0.11 | 0 |
| Stdev | 2.78 | 6.81 | 0.61 | 1.37 | 1.11 | 0.27 | 0.62 | 1.16 | 0.25 | 0.01 |
| Prev(%) | 97.30 | 100.00 | 97.67 | 91.43 | 100.00 | 94.00 | 96.97 | 87.10 | 97.50 | 5.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
