HOMD ::Class:Gammaproteobacteria

Class: Gammaproteobacteria

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria
Lower rank member(s): [Order:Cardiobacteriales] [Order:Enterobacterales] [Order:Lysobacterales] [Order:Pasteurellales] [Order:Pseudomonadales]
Genera:

LINKS: Ecology Home | Life Page: Gammaproteobacteria

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Class: Gammaproteobacteria

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	6.88	8.47	1.16	18.07	18.69	10.04	12.28	4.13	8.63	9.19	3.79	0.32	0.33	14.91	0.11	0.85	0.27	0.52
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.10	1.97	0.06	5.60	4.86	10.04	4.78	0.43	1.37	0.95	0.12	0.03	0.02	14.91	0.06	0.06	0.01	0.01
90^thp	10.31	16.16	3.55	34.16	35.96	10.04	22.90	8.49	16.44	20.67	7.69	0.95	0.36	14.91	0.15	2.82	0.41	0.60
Stdev	7.26	7.02	2.03	11.21	12.47	0	9.76	3.54	7.46	8.09	8.52	0.47	0.82	0	0.04	1.49	0.83	5.08
Prev(%)	100.00	99.75	70.83	100.00	99.38	100.00	100.00	100.00	100.00	99.53	41.54	17.39	33.33	100.00	0	25.00	12.77	42.40

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.25	2.33	6.45	3.40	2.13	2.79	2.84	1.93	2.61	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.05	0.91	0.40	0.25	0.22	0.03	0.05	0.02	0
90^thp	2.79	4.08	16.64	8.13	4.74	8.65	5.31	4.14	7.75	0.05
Stdev	2.22	5.79	6.56	4.43	3.07	4.02	9.38	3.14	4.56	0.03
Prev(%)	93.51	97.40	100.00	97.40	100.00	96.10	94.81	94.81	93.51	18.18

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	5.30	7.59	22.24	13.32	9.04	10.92	6.90	8.73	9.59	0.06
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.65	1.45	7.89	4.17	2.54	4.08	0.95	1.06	1.33	0
90^thp	11.75	16.90	38.43	24.72	16.06	19.89	13.70	17.55	20.77	0.15
Stdev	5.37	6.66	11.51	8.85	5.95	6.75	8.02	7.27	7.28	0.20
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	30.77

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.20	1.77	6.71	3.86	1.95	2.52	2.25	1.57	1.85	1.41	0.13	0.13	0.98	0.86	0.47	0.22	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.06	0.05	0.22	0.22	0.13	0.07	0.07	0.03	0.03	0	0	0	0	0	0	0	0	0
90^thp	2.61	3.63	16.80	9.19	4.77	6.45	4.12	3.88	5.16	2.06	0.26	0.28	1.93	1.92	1.43	0.72	0.15	0
Stdev	1.92	4.04	7.14	4.63	2.30	4.27	6.54	2.52	3.55	5.71	0.41	0.49	2.46	2.13	1.33	0.50	0.17	0
Prev(%)	96.69	98.67	99.30	97.94	97.99	95.39	97.32	95.33	96.13	76.00	57.18	58.64	86.78	89.86	49.30	47.30	26.32	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	7.63	11.74	31.16	28.75	18.35	14.45	11.63	11.81	13.93	5.97	2.37	2.53	5.15	7.18	0.16	0.16	0	0.10
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.08	1.79	3.34	8.60	5.72	4.07	1.00	1.47	1.37	0.03	0	0	0.30	0.36	0	0	0	0
90^thp	17.31	26.21	67.76	55.41	32.99	26.65	24.34	24.26	30.14	16.37	3.58	4.38	11.86	19.77	0.28	0.17	0	0.20
Stdev	7.25	10.47	24.52	18.23	11.78	9.69	13.25	10.77	11.69	13.83	7.52	8.58	9.61	12.38	0.72	0.78	0	0.35
Prev(%)	99.75	99.76	100.00	99.75	100.00	100.00	99.69	100.00	100.00	93.87	86.94	87.04	97.24	95.33	25.86	24.59	0	45.01

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.66	3.28	13.88	10.09	6.74	4.76	3.73	3.71	5.79	0.34
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.08	0.97	1.68	1.59	0.22	0.20	0.18	0.25	0
90^thp	6.92	9.38	35.94	24.72	13.55	10.76	10.33	9.61	15.85	1.29
Stdev	4.31	4.55	14.87	9.79	5.21	4.42	5.23	4.50	7.08	0.80
Prev(%)	98.65	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	45.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	5.54	6.97	1.01	18.59	20.99	11.61	9.15	9.44	5.38	5.38	7.45	0.08	0.22	14.95	0.40	1.15	0.33	0.31
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.67	1.85	0.04	4.55	4.28	11.61	3.96	0.26	0.80	0.57	0	0	0	14.95	0	0	0	0
90^thp	8.94	14.14	2.96	37.81	41.45	11.61	18.73	23.88	11.58	12.52	22.71	0.22	0.26	14.95	0.63	3.73	0.43	0.22
Stdev	5.79	5.80	1.65	13.71	15.11	0	7.63	15.24	5.35	5.34	18.95	0.18	0.71	0	0.88	2.05	1.43	4.18
Prev(%)	100.00	100.00	91.67	100.00	99.73	100.00	100.00	100.00	100.00	99.77	51.80	58.33	43.75	100.00	63.64	71.43	33.33	50.55

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