HOMD ::Species:Gardnerella vaginalis

Species: Gardnerella vaginalis (HMT-0829) Primary Body Site: Vaginal

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Gardnerella; Gardnerella vaginalis

LINKS: Ecology Home | HMT-0829: [Body Sites Data] [Taxon Description] | Life Page: Gardnerella vaginalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan ND:Dewhirst35x9

No Available Datasets for Species: Gardnerella vaginalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.01	0.02	0.01	0.01	15.48	9.50	3.11	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0	0	0	0	0.01	0	0	0	0	0.01	0.02	0.02	0.01	0.01	43.36	22.82	5.35	0
Stdev	0	0	0	0	0	0	0	0	0	0	0.03	0.06	0.05	0	30.97	26.82	10.68	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	1.54	0	3.33	0	25.00	12.50	24.47	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.04	0.14	0.08	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.12	0.03	0.02	0
Stdev	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.16	0.58	0.45	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21.13	16.22	13.16	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.13	0	0	0.26	3.25	3.35	2.90	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.07	9.92	9.06	6.41	0
Stdev	0	0	0	0	0	0	0	0	0	0	1.37	0	0	1.45	9.18	9.70	9.32	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	7.33	0	0	14.67	43.68	35.52	32.98	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.02	0.04	0.03	0	9.38	6.22	8.21	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0.08	0.03	0	16.04	1.27	41.05	0
Stdev	0	0	0	0.01	0	0	0	0	0	0	0.11	0.15	0.13	0	19.36	22.51	19.83	0.01
Prev(%)	0	0	0	5.88	2.13	0	0	0	0	0.23	5.41	16.67	18.75	0	45.45	28.57	31.82	1.09

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