HOMD ::Genus:Gemella

Genus: Gemella

Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Gemellaceae; Gemella
Lower rank member(s): [Species:Gemella bergeri] [Species:Gemella haemolysans] [Species:Gemella massiliensis] [Species:Gemella morbillorum] [Species:Gemella sanguinis]

LINKS: Ecology Home | Life Page: Gemella

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Gemella

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.35	0.38	0.24	3.34	5.00	6.34	0.90	0.71	1.53	0.97	0.10	0.04	0.07	1.74	0.01	0.06	0.02	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.08	0.03	0.01	1.28	1.11	6.34	0.34	0.24	0.29	0.19	0.01	0	0	1.74	0	0	0	0
90^thp	0.84	0.81	0.64	6.06	10.15	6.34	1.42	1.29	2.68	2.06	0.16	0.11	0.03	1.74	0.01	0.22	0.03	0.01
Stdev	0.32	0.73	0.39	2.29	4.03	0	0.46	0.49	1.79	0.90	0.33	0.05	0.30	0	0.01	0.11	0.06	0.07
Prev(%)	75.00	80.76	50.00	100.00	96.28	100.00	50.00	100.00	86.36	98.58	3.08	4.35	3.33	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.83	0.62	5.86	8.12	4.52	1.03	2.48	2.74	1.23	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.03	0.61	1.60	1.10	0.07	0.30	0.21	0.15	0
90^thp	1.41	1.21	11.61	16.41	10.04	1.99	6.70	6.14	3.65	0
Stdev	1.76	1.05	4.96	6.37	4.49	0.95	2.80	3.24	1.27	0.01
Prev(%)	92.21	94.81	100.00	100.00	100.00	92.21	98.70	100.00	96.10	9.09

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.46	0.45	2.64	5.28	2.48	0.61	1.80	1.54	0.71	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.02	0.28	0.70	0.51	0.13	0.16	0.16	0.06	0
90^thp	0.82	0.77	5.74	12.15	4.87	1.20	4.63	3.21	1.51	0
Stdev	0.80	0.92	2.67	5.35	2.74	0.48	2.03	2.02	0.73	0
Prev(%)	90.54	90.54	99.32	99.32	99.32	96.62	97.30	97.97	97.30	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.75	0.51	5.40	8.24	4.66	0.94	1.85	1.82	0.85	0.13	0.08	0.05	0.39	0.37	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.06	0.02	0.74	1.66	1.00	0.05	0.10	0.18	0.11	0	0	0	0	0	0	0	0	0
90^thp	1.63	1.00	10.39	15.90	9.89	2.01	4.13	3.56	2.19	0.36	0.19	0.07	1.14	1.31	0	0	0	0
Stdev	1.46	0.84	4.44	6.96	4.57	0.90	2.69	2.29	0.87	0.29	0.31	0.21	0.76	0.75	0	0	0	0
Prev(%)	95.36	94.04	100.00	97.94	97.99	90.77	95.83	99.33	99.36	53.67	40.80	33.43	52.30	53.46	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.73	0.55	9.87	15.93	7.90	1.17	3.11	2.85	1.21	0.30	0.53	0.49	1.09	1.33	0	0.03	0.03	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.08	0.05	1.26	2.75	1.20	0.19	0.23	0.27	0.14	0	0	0	0	0	0	0	0	0
90^thp	1.23	1.13	23.06	38.18	18.18	2.43	7.77	6.07	2.90	0.72	0.71	0.90	2.23	2.80	0	0.03	0.02	0
Stdev	2.87	0.86	11.25	14.55	8.27	1.13	4.94	4.55	1.37	0.82	2.38	1.81	3.30	3.84	0	0.21	0.31	0.11
Prev(%)	98.03	96.58	99.26	100.00	99.74	97.62	97.82	99.27	99.03	61.69	58.60	54.32	75.17	74.67	0	19.67	18.85	7.30

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.69	0.63	2.85	3.87	2.02	1.77	1.67	1.92	1.13	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.06	0.21	0.33	0.34	0.16	0.20	0.17	0.18	0
90^thp	1.65	1.47	9.23	9.42	4.54	4.17	3.90	6.25	2.52	0.07
Stdev	1.01	0.94	3.51	6.36	1.88	1.89	2.23	2.79	1.01	0.07
Prev(%)	98.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	30.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.32	0.44	0.22	2.54	6.70	5.30	0.73	0.66	1.14	0.99	0.02	0.01	0.03	1.26	0	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.01	0	0.43	0.91	5.30	0.18	0	0.12	0.14	0	0	0	1.26	0	0	0	0
90^thp	0.78	0.75	0.49	5.50	15.79	5.30	1.32	1.47	2.45	2.25	0	0	0	1.26	0	0.01	0	0
Stdev	0.33	2.08	0.43	2.22	7.21	0	0.53	0.70	1.30	1.04	0.21	0.02	0.17	0	0	0.04	0.04	0.06
Prev(%)	95.83	92.17	58.33	100.00	98.94	100.00	100.00	81.25	92.00	98.83	4.05	8.33	6.25	100.00	0	14.29	5.56	1.27

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