HOMD ::Species:Granulicatella adiacens

Species: Granulicatella adiacens (HMT-0534) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella adiacens

LINKS: Ecology Home | HMT-0534: [Body Sites Data] [Taxon Description] | Life Page: Granulicatella adiacens

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Granulicatella adiacens

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.28	0.30	0.37	0.20	0.29	0.71	0.45	0.51	0.45	0.87	0.04	0.03	0.01	0.71	0	0.03	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.03	0.06	0.02	0.02	0.06	0.71	0.26	0.14	0.12	0.24	0	0	0	0.71	0	0	0	0
90^thp	0.55	0.63	0.88	0.60	0.52	0.71	0.72	1.05	0.98	1.64	0.06	0.06	0.01	0.71	0	0.07	0.01	0
Stdev	0.29	0.25	0.67	0.27	0.32	0	0.20	0.44	0.35	0.83	0.12	0.06	0.01	0	0	0.07	0.02	0.13
Prev(%)	75.00	93.16	50.00	60.00	59.75	100.00	75.00	100.00	72.73	99.76	3.08	4.35	0	0	0	12.50	0	0.80

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.55	0.55	0.21	0.61	1.68	1.29	1.52	1.32	2.78	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.09	0.04	0	0.08	0.49	0.16	0.24	0.20	0.77	0
90^thp	1.16	1.30	0.55	1.44	3.70	2.32	3.34	2.79	5.29	0
Stdev	0.76	0.51	0.38	0.83	1.37	1.16	1.23	1.09	1.88	0.01
Prev(%)	92.21	98.70	80.52	98.70	100.00	93.51	97.40	100.00	100.00	6.49

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to G. adiacens and G. elegans were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.27	0.34	1.21	0.81	1.37	0.80	0.87	0.78	1.57	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.06	0.03	0.14	0.47	0.21	0.19	0.14	0.39	0
90^thp	0.55	0.63	3.28	1.88	2.38	1.67	1.63	1.58	3.26	0
Stdev	0.34	0.39	1.45	0.93	0.84	0.63	0.61	0.61	1.18	0.01
Prev(%)	92.57	98.65	95.27	99.32	99.32	99.32	100.00	98.65	100.00	7.69

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.41	0.47	0.26	0.84	1.69	1.25	1.51	1.45	2.68	0.10	0.07	0.04	0.24	0.25	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0.05	0.01	0.09	0.38	0.08	0.15	0.15	0.47	0	0	0	0	0	0	0	0	0
90^thp	0.94	1.13	0.71	1.98	3.49	2.75	3.10	3.09	5.42	0.20	0.12	0.07	0.66	0.80	0	0	0	0
Stdev	0.46	0.44	0.56	0.87	1.19	1.24	1.77	1.54	2.27	0.33	0.34	0.20	0.70	0.56	0	0	0	0
Prev(%)	96.03	98.01	90.91	95.89	99.33	90.77	97.02	99.33	100.00	48.67	35.63	28.33	47.13	42.40	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.47	0.58	0.44	1.24	3.01	1.47	1.91	1.64	3.48	0.16	0.20	0.21	0.25	0.31	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.08	0	0.19	0.90	0.26	0.15	0.17	0.58	0	0	0	0	0	0	0	0	0
90^thp	1.05	1.28	1.28	2.78	5.80	3.04	4.42	3.61	7.50	0.34	0.40	0.44	0.87	1.08	0	0	0	0
Stdev	0.60	0.61	0.69	1.31	2.39	1.50	2.06	1.74	3.46	0.50	0.77	1.07	0.51	0.62	0	0	0	0
Prev(%)	94.81	98.54	79.01	96.28	98.98	98.51	96.89	99.76	99.27	49.81	36.62	40.43	52.41	52.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.75	1.03	1.13	0.84	1.43	2.41	1.35	2.00	1.88	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.14	0.06	0.19	0.63	0.53	0.24	0.07	0.22	0
90^thp	2.05	2.67	3.60	1.72	2.57	4.23	3.28	3.28	4.14	0.04
Stdev	0.87	1.40	1.99	0.60	0.80	1.96	1.40	3.75	1.60	0.04
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.31	0.33	0.38	0.20	0.17	0	0.09	0	0	0.01	0	0.01	0	0.41	0	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.05	0	0	0	0	0	0	0	0	0	0	0	0.41	0	0	0	0
90^thp	0.70	0.72	0.93	0.54	0.47	0	0.25	0.01	0.01	0.02	0	0	0	0.41	0	0	0	0
Stdev	0.39	0.30	0.75	0.33	0.26	0	0.14	0.01	0.01	0.02	0.02	0.07	0	0	0	0.06	0.01	0
Prev(%)	83.33	97.22	70.83	64.71	72.34	0	75.00	18.75	20.00	20.19	1.35	8.33	0	100.00	0	7.14	0.51	0.18

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